Glyma05g08230 - SoyBase

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Report for Sequence Feature Glyma05g08230

Feature Type:	gene_model
Chromosome:	Gm05
Start:	8185892
stop:	8192838
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g08230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26650	AT	Annotation by Michelle Graham. TAIR10: K+ transporter 1 \| chr2:11331965-11336444 REVERSE LENGTH=857	SoyBase	E_val: 0	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010107	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion import	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0045595	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation	SoyBase	N/A	ISS
GO:0048589	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental growth	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0090333	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal closure	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inward rectifier potassium channel activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF6	Panther	EAG-RELATED VOLTAGE-GATED POTASSIUM CHANNEL	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
PF00520	PFAM	Ion transport protein	JGI		ISS
PF11834	PFAM	Domain of unknown function (DUF3354)	JGI		ISS
UniRef100_G7JV81	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel n=1 Tax=Medicago truncatula RepID=G7JV81_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339C94	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C94 related cluster n=1 Tax=unknown RepID=UPI0002339C94	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g08230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g08230

Paralog	Evidence	Comments
Glyma17g12740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g08230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g010600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g08230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g08230

Limit To All Plant Sequences

>Glyma05g08230.1   sequence type=CDS   gene model=Glyma05g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGTGTCCATGTCCGTGTGCGGCCAAGATGAGATTGAGTTGTCAAGAGATGGCAGCCACTACAGTCTCTCAACTGGAATACTACCTTCCCTTGGAGCCAAAAGTAACCGCAGACTCAAGCTCAAACCCTTCATTATATCTCCCTATGACCGCCGTTATAGGATATGGGAAACTTTCCTTGTTATTCTGGTGGTTTACACTGCTTGGGTTTCTCCCTTTGAATTCGGATTCCTGAAGAAACCACAAGCACCCCTTTCCATAACCGATAACATTGTCAATGGATTTTTTTTCGTGGATATAGTTCTGACCTTCTTCGTGGCTTACATTGACAAAAGCACTTATTTGATCGTGGATGACCGAAAACAGATTGCTTGGAAATATGCAAGGACTTGGTTGGCCTTTGATGTTATCTCCATCATTCCCTCAGAGCTTGTACAAAAGATATCACCTTCTCCTCTTCAATCTTATGGGCTATTCAACATGCTTAGGCTTTGGCGTCTTCGAAGAGTTAGTGCCTTGTTTTCTCGGCTTGAGAAGGACAAAAACTATAACTATTTTTGGGTTCGATGCGCAAAGCTCATTGCTGTTACCCTCTTCGCTGTTCATTGTGCTGCATGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCCAAAAAGACATGGATTGGTGCAACCATGGATAATTTCCTTGAACGCAGCTTGTGGTCAAGATACGTGACATCTATTTATTGGTCCATTACTACCTTAACAACTGTTGGTTATGGAGATTTGCATCCTGTGAATTCAAGGGAGATGATCTTTGACATTTTCTATATGCTCTTTAATCTGGGGTTAACTGCGTATCTGATTGGTAATATGACCAACTTGGTTGTCCATGGCACAAGTCGAACCAGAAAATTTAGGGATACCATACAAGCTGCCTCAAATTTTGCCCAAAGGAACCAATTGCCGCATCGGTTGCAAGACCAAATGCTTGCACACTTGTGTTTGAAGTATAGAACCGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGATTCTCTTCCTAAAGCCATCAGATCGAGCATTTCACATTATCTTTTCTATTCTCTGATTGACAAGGTCTACTTGTTTCATGGAGTTTCAAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCAGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGAACTACTAGTTCTTAAAAATGGGGTTGAGCAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAAATTGGCGTGCTTTGTTATAAGCCACAGCTTTTCACAGTTCGAACGAAGCGACTAAGTCAGTTGCTCAGGCTAAACCGTACTTCGTTCTTGAATATTGTTCAGGCCAACGTGGGAGATGGAACCATAATAATGAATAATCTCCTTCAGCATTTGAAAGAGATCAACGATCCAATCATGGAGGGAGTTTTGGTGGATATTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGAGATGACTTGTTGTTACATCAATTACTCAAACGGGGCATGGATCCAAATGAATCCGACAACAATCGAAGGACAGCTTTGCATATAGCGGCATCTCAAGGAAAAGAGAACTGTGTTTCGCTTCTGTTAGATTATGGGGCGGATCCCAACATTAGAGATTTGGAAGGTAATGTGCCACTATGGGAGGCTATAGTGGAAGGACATGAGTCAATGAGCAAGCTGTTATCAGAGAATGGAGCAAACTTGCAATGCGGGGATGTGGGTCAATTTGCATGTAATGCCGTTGAACAAAACAGTCTCAACTTGCTGAAGGAAATAATGCGCTATGGAGGAGATATCACGCTTCCAAACAGCAACACAGGGACCACAGCCTTGCACGTTGCAGTCTCTGAAGGCAACGTTGAGATTGTCAAATTCCTTTTGGATCACGGGGCGAGTATTGACAAGCCAGACAAGCATGGCTGGACCCCAAGAGATCTTGCAGATCAGCAGGCACATACAGAAATCAAAGCCCTTTTTGATTCCACTGGGGAGCCTAAGGTTCAGTCTTCCTTCGCTATTCCCGAGAGGAACAGCAAGATCAGGTACCTTGGTAGGTTCACAAGTGAGCCAACCATGCCATTGCCTCTTGATGGCTCGTTTCATGAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCGGCCGAGGCGTCGGAGCAACAACTACCATAACTCACTCTTTGGGATAATGTCAGCAGTACACAATGGGGAAAAGGACCTGCTTTCAGCTGTTGACATGAATAACAATGCAAGGAATGGTATGAAGAGTAGTAGTGCTAGTAGTAGTGCACTTGGTCCAACTAGAGTTATCATTAGTTGCCCTGAGAAGGGTGAGGTTGTTGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTAGTTGAGATTGGAGCCAAGAAATTTGGTTTCTATCCTAATAAGGTTGTATGCAAAGATGGAGGTGAAATTGAAGATCTGGAGGTGATTAGGGATGGTGACCATCTTGTTTTTCTTGGTGCAAGTGGGGTGCTTGAATCCAATTGTCCAGCTCCAGCACCACTAACCAATGGTGTGCATATATAG

Predicted protein sequences of Glyma05g08230

Limit To All Plant Sequences

>Glyma05g08230.1   sequence type=predicted peptide   gene model=Glyma05g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVSMSVCGQDEIELSRDGSHYSLSTGILPSLGAKSNRRLKLKPFIISPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQAPLSITDNIVNGFFFVDIVLTFFVAYIDKSTYLIVDDRKQIAWKYARTWLAFDVISIIPSELVQKISPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDKNYNYFWVRCAKLIAVTLFAVHCAACFYYLIAARYHDPKKTWIGATMDNFLERSLWSRYVTSIYWSITTLTTVGYGDLHPVNSREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVELLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTSFLNIVQANVGDGTIIMNNLLQHLKEINDPIMEGVLVDIENMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALHIAASQGKENCVSLLLDYGADPNIRDLEGNVPLWEAIVEGHESMSKLLSENGANLQCGDVGQFACNAVEQNSLNLLKEIMRYGGDITLPNSNTGTTALHVAVSEGNVEIVKFLLDHGASIDKPDKHGWTPRDLADQQAHTEIKALFDSTGEPKVQSSFAIPERNSKIRYLGRFTSEPTMPLPLDGSFHESQSQSQSQSRPRRRSNNYHNSLFGIMSAVHNGEKDLLSAVDMNNNARNGMKSSSASSSALGPTRVIISCPEKGEVVGKLVLLPGSFQELVEIGAKKFGFYPNKVVCKDGGEIEDLEVIRDGDHLVFLGASGVLESNCPAPAPLTNGVHI*

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