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Report for Sequence Feature Glyma05g07991

Feature Type:gene_model
Chromosome:Gm05
Start:7918013
stop:7923505
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g07991
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18520AT Annotation by Michelle Graham. TAIR10: histone deacetylase 15 | chr3:6361605-6365367 FORWARD LENGTH=552 SoyBaseE_val: 0ISS
GO:0009294GO-bp Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation SoyBaseN/AISS
GO:0016575GO-bp Annotation by Michelle Graham. GO Biological Process: histone deacetylation SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004407GO-mf Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1342 KOG Histone deacetylase complex, catalytic component RPD3 JGI ISS
PTHR10625Panther HISTONE DEACETYLASE JGI ISS
PTHR10625:SF22Panther HISTONE DEACETYLASE-RELATED JGI ISS
PF00850PFAM Histone deacetylase domain JGI ISS
UniRef100_B9RE34UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase hda1, putative n=1 Tax=Ricinus communis RepID=B9RE34_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233A708UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A708 related cluster n=1 Tax=unknown RepID=UPI000233A708 SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g07991
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g07991 not represented in the dataset
Glyma05g07991 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07991
ParalogEvidenceComments
Glyma17g13000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07991 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g012900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g07991
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g07991
>Glyma05g07991.1   sequence type=CDS   gene model=Glyma05g07991   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTACATGCAGAAGTTGAAAAGAAATCAACTCTGCATCCTGAGAGGCCAGATCGTCTTCAAGCCATTGCCGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACGGTTCATTCGTTGGAGCATATTGAATCTGTGGAAGTTACAAGTGAATCACTTTCTAGTTATTTCACGTCTGATACATATGCCAATGAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTAGCATCAGCAATTGTTTCTGGGCGAGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACAGGCAATGGGGTTCTGCCTTCACAATAATGCTGCCGTGGCTGCATTGGCAGCTCAGGCTGCAGGGGCTAGGAAGGTGCTAATTTTGGATTGGGATGTTCATCATGGAAATGGGACACAAGAAATATTTGAACAAAACAAATCTGTCTTGTATATATCATTGCATAGACATGAGGGAGGAAAGTTTTATCCTGGTACTGGAGCTGCCGAAGAGGTTGGTAGTATGGGTGCAGAAGGATTCTGTGTGAATATTCCATGGAGTCAAGGAGGAGTTGGTGACAATGACTATATTTTTGCATTTCAGCATGTTGTCCTTCCTATAGCTGCTGAGTTTAATCCAGATCTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGTGATATTACTCCCTCTGGATATGCACATATGACAAATATGTTGAATGCCCTTTCTGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCGTCTTCTGCAACTGCAGTAATCAAGGTATTATTGGGTGAGAGTCCTGGATGTGAACTGGAAAATAGCTTCCCTTCCAAAGCTGGCCTGCAAACTGTTCTGGAAGTGCTCAAAATTCAGATGAACTTTTGGCCTGCCTTGGGTCCCATTTTTGTGAATTTGGAGTCACAATGGAGGATGTACTGTTTTGAAAGAAAAAGGAAACAGATTAAGAAACGACGCCGAGTTCTGGTTCCAATGTGGAGGTGGGGACGAAAAAGTTTGTTATTCCATTTTCTGAACGGCCACCATAATGTAAAATCAAAGTTATGTTGA
Predicted protein sequences of Glyma05g07991
>Glyma05g07991.1   sequence type=predicted peptide   gene model=Glyma05g07991   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLHAEVEKKSTLHPERPDRLQAIAASLARAGIFPGKCYSIPAREITPEELITVHSLEHIESVEVTSESLSSYFTSDTYANEHSALAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVRQAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGFCVNIPWSQGGVGDNDYIFAFQHVVLPIAAEFNPDLTIVSAGFDAARGDPLGCCDITPSGYAHMTNMLNALSGGKLLVILEGGYNLRSISSSATAVIKVLLGESPGCELENSFPSKAGLQTVLEVLKIQMNFWPALGPIFVNLESQWRMYCFERKRKQIKKRRRVLVPMWRWGRKSLLFHFLNGHHNVKSKLC*






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