Glyma05g07980 - SoyBase

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Report for Sequence Feature Glyma05g07980

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7913846
stop:	7915584
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49010	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr1:18132714-18133778 FORWARD LENGTH=314	SoyBase	E_val: 2.00E-93	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_Q0PJJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: MYB transcription factor MYB109 n=1 Tax=Glycine max RepID=Q0PJJ2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB109 n=1 Tax=Glycine max RepID=Q0PJJ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07980

Paralog	Evidence	Comments
Glyma17g13010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g013000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07980

Limit To All Plant Sequences

>Glyma05g07980.1   sequence type=CDS   gene model=Glyma05g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCAAGTGGAACCATTTGGAGCTATGATGAAGAAAAAGCATTTGAGAATGCCATAGCTATGCATTGGATTGAGGAATCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTGAAGCAACATTACCAGGTTCTTGTAGAGGATGTAAGTGCAATAGAGGCAGGTCACATATCATTCCCAAACTATGCTTCTGATGAAACCACATCTTCAAATAAGGACTTTCATGGCTCTTCCAAGGCGACAAGCTCAGATAAAAGATCAAATTGTAATTATGGAAGTGGTTTTTCTGGGTTAGGACTTGACTCCACCACTCATAGTAGTGGTAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGAAGAAAAGGAATTCCATGGACTGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACTCCCACTCAAGTGGCAAGCCATGCACAAAAGTACTTCATAAGGTTGAATTCTATGAATAGAGACAGGAGGAGGTCTAGTATTCATGATATCACTAGTGTGAACAATGGAGATGTAGCTAGTAGCCAAGCACCAATTACAGGGCTGCATAGTAGCACAATTTCTTCAAACACAATGGGTGTAGGACAATCCCTTAAGCATAGAGTTCAGGGTCACATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGGCATCCTGTGGCTGCTCCTCCAGGGCACATGGCATCTGCAGTTGGCACTCCTGTCATGCTTCCTCCTGGACCCCACCCCCATCCCCATCCCCATCACCATGCCCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCACCTCCAACAATGCATCAATAA

Predicted protein sequences of Glyma05g07980

Limit To All Plant Sequences

>Glyma05g07980.1   sequence type=predicted peptide   gene model=Glyma05g07980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSGTIWSYDEEKAFENAIAMHWIEESSKEQWEKIASAVPSKSMEEVKQHYQVLVEDVSAIEAGHISFPNYASDETTSSNKDFHGSSKATSSDKRSNCNYGSGFSGLGLDSTTHSSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASSQAPITGLHSSTISSNTMGVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHPHHHAHPHPPYVLPLAYPMAPPTMHQ*

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