Glyma05g07960 - SoyBase

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Report for Sequence Feature Glyma05g07960

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7896653
stop:	7905676
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18470	AT	Annotation by Michelle Graham. TAIR10: Transmembrane Fragile-X-F-associated protein \| chr1:6356407-6360057 REVERSE LENGTH=467	SoyBase	E_val: 0	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR10044	Panther	INHIBITOR OF APOPTOSIS	JGI		ISS
PTHR10044:SF7	Panther	NEURONAL INHIBITOR OF APOPTOSIS PROTEIN	JGI		ISS
PF10269	PFAM	Transmembrane Fragile-X-F protein	JGI		ISS
UniRef100_D7KRP0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KRP0_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1K1A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K1A4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07960

Paralog	Evidence	Comments
Glyma17g13040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g013200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07960

Limit To All Plant Sequences

>Glyma05g07960.1   sequence type=CDS   gene model=Glyma05g07960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTGGCGCAGGGTATTGAATTCAGCACAGGCCTTGGCTGCACACACTTTCCTTTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTGGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATTGGGCTCCATGCCATGCCGTTGTTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGATCGTGGCTATGCTGCAGTTGGTCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCTATATGGGAAACTCTTCCTCATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTATTATTGCCGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCCGTCATTCATAGAAATTCAAGAGAAGCTAGTAGTTCATCTTCAACTACGATTGGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGACGAAAATCAACCCCAGGGGAGAATCTGTAGCCTTCAAGACATAGGAGGTCATTTCATGAAAATACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGGGAACACCTGCTTGTGCTGTATATATACCGCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTGCAAGGAGCTGGTGTACTGTTATCTGCATCTAAATTAGGGGAGAAGCTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGTGCCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACATGCACGACTATACCATGAGGGAGCAATTGGGTATAATACATTTAGTGGTTATCCTCCTGAGATCGTTAAGAAAATGCCAAAAAAAGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACAGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGCACTTGCTCACAGAAGCGTAAGAAGTGCCCTATTTGCCGTGATTCTATTGCTGAGCGTCTGCCTGTATATGATGTTTAG

Predicted protein sequences of Glyma05g07960

Limit To All Plant Sequences

>Glyma05g07960.1   sequence type=predicted peptide   gene model=Glyma05g07960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSSSWWVIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYDRGYAAVGLKIVFLPLLTFEIIILIDNFRMCKALMPGDGENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGDVGALGWWDLFINFIIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIGYLDWNSGLVVSTDENQPQGRICSLQDIGGHFMKIPIIVFQVLLCMHLEGTPACAVYIPLPVIFSPLFLLQGAGVLLSASKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLCHGSRLLGWWSIDEGSREEHARLYHEGAIGYNTFSGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCSQKRKKCPICRDSIAERLPVYDV*

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