Glyma05g07943 - SoyBase

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Report for Sequence Feature Glyma05g07943

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7879813
stop:	7882259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07943

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18550	AT	Annotation by Michelle Graham. TAIR10: TCP family transcription factor \| chr3:6383769-6385604 FORWARD LENGTH=429	SoyBase	E_val: 1.00E-26	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:2000032	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of secondary shoot formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_Q1WK55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CYC5 n=1 Tax=Lotus japonicus RepID=Q1WK55_LOTJA	SoyBase	E_val: 1.00E-105	ISS
UniRef100_UPI000233A706	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A706 related cluster n=1 Tax=unknown RepID=UPI000233A706	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07943

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g07943 not represented in the dataset	Glyma05g07943 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07943

Paralog	Evidence	Comments
Glyma17g13065	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07943 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g013300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07943

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07943

Limit To All Plant Sequences

>Glyma05g07943.1   sequence type=CDS   gene model=Glyma05g07943   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTCCTCAAATACCTCCCTCAACGGCAATGAACTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCGAATTACGCCCTTCCTCTTCCTCCTCCTCCTCCTCTTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCAGGAACACCACCATGACTTCCTCCTACTTCACCACTCTCTAGCTGACTCTGGAGTACTCACCAAAAACCTTGACGTTGCGGCCGAAATCTCGCCAATTCCTTGCCCTGGAGAAGGCTCAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGGGGCCTCAGAGATCGAAGAATGAGGTTGTCCCTCGAAGTCGCGAAGCGGTTTTTTGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGGAAGGGAAAAAACAAGTGTTGGTGGTGCGAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGGAGTTAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGAAGAGAAGAACAAACAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACTCATCAAAGCCAAAGCGTGAACCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGATCAAGAACCAAGTTCTCACAACGCGAAGGAGCATTGGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGCGATCATGAACAAGTGGAGCCCAACTATGATGTTCAATTCTCTTCACAACTCAGGAGTCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGCAAACCTTGGGAAGCCTACAGCAATCACATCTAA

Predicted protein sequences of Glyma05g07943

Limit To All Plant Sequences

>Glyma05g07943.1   sequence type=predicted peptide   gene model=Glyma05g07943   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYSSNTSLNGNELISYPNQPFCFRPFSFESNPTNSSKEETNSNYALPLPPPPPLLSFFQSPFDENIFQEHHHDFLLLHHSLADSGVLTKNLDVAAEISPIPCPGEGSIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREKTSVGGAKSASSTSECEGVSSLDEVVVSGGVNEEQERETVPNMKRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTRRVLADASNLNRLSSWNPFETVEDSAGTTHQSQSVNHPSLDVHLPEADQEPSSHNAKEHWGENMAHEDNSLAIMNKWSPTMMFNSLHNSGVLQEHQFAEFQSLGKPWEAYSNHI*

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