Glyma05g07926 - SoyBase

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Report for Sequence Feature Glyma05g07926

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7842038
stop:	7861430
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07926

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73960	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor 2 \| chr1:27805173-27814433 REVERSE LENGTH=1390	SoyBase	E_val: 0	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1932	KOG	TATA binding protein associated factor	JGI		ISS
PTHR15137	Panther	TRANSCRIPTION INITIATION FACTOR TFIID	JGI		ISS
PTHR15137:SF1	Panther	TBP-ASSOCIATED FACTOR 2	JGI		ISS
PF01433	PFAM	Peptidase family M1	JGI		ISS
UniRef100_D7KRP1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane alanyl aminopeptidase n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KRP1_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A705	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A705 related cluster n=1 Tax=unknown RepID=UPI000233A705	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07926

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g07926 not represented in the dataset	Glyma05g07926 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07926

Paralog	Evidence	Comments
Glyma17g13080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07926 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g013400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07926

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07926

Limit To All Plant Sequences

>Glyma05g07926.1   sequence type=CDS   gene model=Glyma05g07926   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGCCTCGCAAGCCCAAGAACAACGAAGACCCCAAGCCCGAAAACTCCGGCGCCGTAGTTCACCACCAAAAGCTATGCCTCTCCATCGACATCGACAAACGCCAAGTCCACGGGTACACTGAATTGGAGATTGCGGTACCGGAGATTGGGATCGTAGGGTTGCACGCGGAAAATTTAGGGATTGAGAGTGTTTGGGTTGACGGCGAGCCCACGGAGTTCGAGTATTACCCGCACCGTCAGCAGCAGGCCGAGGATGACAAGAGGTTTAGCTCCGTGTGTTCTCCTAGCTCTGCTGCTGATGCTGCTGTCTCAGTGTACATGTCCGCTCTCGAGAAGGAACTGGTTCCCAATTTACTCATTAATTGTTGCAAACCTTCAAAGGCTGAAAGTGAACAACAGCAGGAGCGACAACCCGCTTCTGAGAACGGGTTTCACTCCTCGGCTGAGCCCAAGCAGAATGTCAGAACTGTTCGTATTGACTATTGGATAGAGAAGGCAGAGACAGGAATACACTTCAGAAATAATCTTCTTCATACCGATAATCAGATAAGGAGAGCAAGGTGTTGGTTCCCTTGTATAGATGACAATTCGCAACGATGCTGCTACGACCTGGAGTTCACTGTAGCACATAATCTTGTGGCTGTCAGTACAGGAAGCTTGCTTTATCAGGTCTTAAGCAAGGACAATCCTCCTCGGAAAACATATTTCTATAAATTGGATGTTCCAGTTGCTGCAAGGTGGATATCTTTGGCTGTTGCCCCATTTGAAGTTTTTCCTGATCACCAATTTAGTCTTATATCTCATATGTGTTCGCCGCCTAATCTGTCAAAGATGCGGAATACAGTGGATTTTTTCCACAGTGCCTTCAGCTGCTATAAGGATTTTCTTTCTGTAGACTTCCCGTTTGACTCATATACGCAAGTTTTCATAGAGCCAGAGATGGCAGTGTCATCATTGAGTTTGGGAGCCTCTATGAGTATATTTAGTTCCCAAGTTTTGTTTGATGAGAAGGTTATTGACCAGACTATTGATACAAGGGTTAAACTTGCATATGCTCTCGCAAGACAGTGGTTTGGTGTGTATATCACTCCTGAGGCACCAAATGATGAGTGGCTCTTGGATGGACTTGCTGGTTTCTTGACAGATTTTTTTATTAAGAAACATTTGGGAAACAATGAGGCACGGTACAGGAGATACAAGGAAAATTGTGCTGTTTGCAAAGTTGATAATGATGGAGCAACAGCTTTGAGCTGTTCAGCTTCCTGTAAAGATTTATATGGAACTCAGTGCATTGGTTTGTATGGAAAAATTAGATCATGGAAGTCTGTGGCAGTTCTTCAGATGTTGGAAAAGCAAATGGGTCCTGAATCTTTTCGTAGAATTTTGCAAACTATAGTTTCTCGTGCTCAAGATAAAACACGTTCCATAAAGACTCTTAGTACTAAGGAGTTTCGACATTTTGCTAACAAGGTTGGGAATCTTGAACGCCCATTTCTTAAAGACTTCTTTCCTCGGTGGGTCAGTTCTTGTGGATGTCCTGTTTTAAGGATGGGGTTTTCCTATAACAAAAGGAAGAACATGGTTGAATTGGCCGTGTTGCGGGGATGTACAACATTGCAGACTTCAAGTACATCCATTCTTGATATTAATCCTGACACAGAAACTCGAGATGGAGATATTGGATGGCCTGGTATGATGAGCATCAGGGTATATGAACTTGATGGTATGTATGACCATCCAATTCTACCAATGGCTGGAGAAGCATGGCAACTATTGGAAATACAATGCCACTCAAAGCTTGCCGCTAGGCGCTTTCAGAAGCCCAAGAAAGGTTTAAAACTTGATGGCTCTGATGATAATGGTGATGTGCCTTCCATGGATATGCGCTTGAATACCGAGTCCCCTTTATTATGGATTAGAGCAGATCCTGATATGGAGTACCTTGCTGAGGTTCATTTTAACCAACCAGTTCAAATGTGGATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTAAATGCCCTAAACAATTTTCTCAGTGACTCAAAGGCTTTCTGGAGAGTACGGATTGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGGAAACTGATTTTTCTGGTCTACTTCATTTGGTGAAATTTTACAAGAGTCGAAGGTTTGATCCTGACATTGGACTGCCAAAGCCAAACGATTTTCAAGACTTTGCTGAGTATTTTGTTCTTGAGGCTATTCCTCATGCTGTTGCTATGGTTAGAGCAGCTGACAAGAAAAGCCCAAGAGAAGCTATCGAGTTTGTTTTACAGCTATTGAAGTACAATGACAACAATGGGAACCCTTACTCTGATGTCTTCTGGCTTGCTGCGTTGGTCCAGTCAGTTGGCGAGCTTGAGTTTGGACAACAGAGTATTCTCTTATTGTCATCACTCCTCAAACGCATTGACCGGCTTCTACAATTTGATAGTCTCATGCCAAGCTACAATGGAATCTTGACTATCAGTTGTATCCGGACATTGACCCAGATTGCATTAAAGCTTTCGGGGTTCATTCCTCTTGATCGAGTTTATGAACTTGTAAAGCCTTTTCGGGACTTAAAGGCATTGTGGCAAGTTCAAATTGAAGCAAGTAAAGCACTCCTTGATCTTGAATTCCACTGCAAGGGCATGGATTCAGCTTTGCTTTTATTTATCAAATACATAGAGGAGGAGCATTCCTTAAGAGGGCAGTTAAAACTGGCCACCCATGTTATGAGGCTATGTCAGATGAGGGATGGATTGAATTCAAATGACGAAATTACAAGCCAAACTCTTGTCTCTATGCTTAATTTACTAGAAGGGCGTATAGCTTTTAATAATGTCTCTCTCCGGCACTACTTGTTCTGCATATTACAAATACTTGCAAGAAGACCCCCAACTCTTCATGGGATTCCCAGAGGAAACAGAATGCTGCATATGAGTCTTGCAGAAGCTTGTAACTATCAGAAGAACATATTTGCTCTTGATTCAGAAAGCAAACCCTTGGATCTGCCTAGCTCTACCAAAAATCTTACACAAAATTTGGGCCCGACAATGGAGGGCTTGAGGGATGCAGTTGATGAAGCTCCTAAGGACCAACCTTGTGAAGCTTCCACACAGGTGCACCTTGAAGCTTTAAAGGAAGCATCTCTAGAGAAGCCCAAAGAGGTATTTACTGAATTTCCCCAGGAAGCACCAATTGAAGCTCCAAATCCAAATGAAGTTTCCAAGGAAGTTGATACTGTATCGAATAGCCATGAAAGAAAGAGGCCCATTAAAATCAAGGTCAAGCAATCTTCTGCCACCAGTAGGGCTGATACTGATAATCAAGTGGTTGAATGTTCTTTAGGTGGTCGTAATGAAATGGATCATGGAGCTAGTAGTTCAGTTTCTGTAGATGCACCCCAGAGGAATTTTGCCGAGACTGTTAGCATCAGTAATCATAATATTGACGAAGTTAATTCTTGGCATGATCGTGGTTCTCGCATGACTGCCAGCATTGGCAGTGCAAAGTTTTTGAGTGATGGTGATGAATTGGTCAAAGAACTGCAGTGCACTGCTGATTCAAGTATAGTTTATTCACAACCTCAGCCAGAAGATCCATCATCATCCAGTATTATCCAGGATAACAATATAGATGCTGATGCACGACGATATGCCAGCCTTCAAACTCTTTCAGTTGCAAGATTTGATCCTGACGGAGAATCATTAGGTAAAGAAATTTCTGCTCGGGGGAAAGAAAAGCACAAAAGCAAGGAAAAGAAACGGAAACAGGAAAGTAATAAAGGACACCATGATGATGTAGAATATTTGGAGCGAAAACGACTAAAGAAAGAGAAAAAACATCGGGAAAAAGAGCTGGCAAAACTTCAGAGTGATGAAGCAAAGAGATCCTCCATTGATTTGTCAAGCAAGAAAGTGGAACCCGTAGTGGACGTTGCTAGACAGGTTAAATCTGTTGAACCCAGTGGATATAATTCTAAAGTAGAAATAAAAAAGATAGATACCAAACCGGAGCCATCTGAAGGCACATCTGGTGCACCAAAAATTCGAATTAAAATTAAAAACCGAATGCTCAGCAAGTCCTAG

Predicted protein sequences of Glyma05g07926

Limit To All Plant Sequences

>Glyma05g07926.1   sequence type=predicted peptide   gene model=Glyma05g07926   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPRKPKNNEDPKPENSGAVVHHQKLCLSIDIDKRQVHGYTELEIAVPEIGIVGLHAENLGIESVWVDGEPTEFEYYPHRQQQAEDDKRFSSVCSPSSAADAAVSVYMSALEKELVPNLLINCCKPSKAESEQQQERQPASENGFHSSAEPKQNVRTVRIDYWIEKAETGIHFRNNLLHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPRKTYFYKLDVPVAARWISLAVAPFEVFPDHQFSLISHMCSPPNLSKMRNTVDFFHSAFSCYKDFLSVDFPFDSYTQVFIEPEMAVSSLSLGASMSIFSSQVLFDEKVIDQTIDTRVKLAYALARQWFGVYITPEAPNDEWLLDGLAGFLTDFFIKKHLGNNEARYRRYKENCAVCKVDNDGATALSCSASCKDLYGTQCIGLYGKIRSWKSVAVLQMLEKQMGPESFRRILQTIVSRAQDKTRSIKTLSTKEFRHFANKVGNLERPFLKDFFPRWVSSCGCPVLRMGFSYNKRKNMVELAVLRGCTTLQTSSTSILDINPDTETRDGDIGWPGMMSIRVYELDGMYDHPILPMAGEAWQLLEIQCHSKLAARRFQKPKKGLKLDGSDDNGDVPSMDMRLNTESPLLWIRADPDMEYLAEVHFNQPVQMWINQLEKDKDVIAQAQAIAALEASPQLSFSIVNALNNFLSDSKAFWRVRIEAAFALANSASEETDFSGLLHLVKFYKSRRFDPDIGLPKPNDFQDFAEYFVLEAIPHAVAMVRAADKKSPREAIEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILLLSSLLKRIDRLLQFDSLMPSYNGILTISCIRTLTQIALKLSGFIPLDRVYELVKPFRDLKALWQVQIEASKALLDLEFHCKGMDSALLLFIKYIEEEHSLRGQLKLATHVMRLCQMRDGLNSNDEITSQTLVSMLNLLEGRIAFNNVSLRHYLFCILQILARRPPTLHGIPRGNRMLHMSLAEACNYQKNIFALDSESKPLDLPSSTKNLTQNLGPTMEGLRDAVDEAPKDQPCEASTQVHLEALKEASLEKPKEVFTEFPQEAPIEAPNPNEVSKEVDTVSNSHERKRPIKIKVKQSSATSRADTDNQVVECSLGGRNEMDHGASSSVSVDAPQRNFAETVSISNHNIDEVNSWHDRGSRMTASIGSAKFLSDGDELVKELQCTADSSIVYSQPQPEDPSSSSIIQDNNIDADARRYASLQTLSVARFDPDGESLGKEISARGKEKHKSKEKKRKQESNKGHHDDVEYLERKRLKKEKKHREKELAKLQSDEAKRSSIDLSSKKVEPVVDVARQVKSVEPSGYNSKVEIKKIDTKPEPSEGTSGAPKIRIKIKNRMLSKS*

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