Glyma05g07870 - SoyBase

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Report for Sequence Feature Glyma05g07870

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7800271
stop:	7805162
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G34930	AT	Annotation by Michelle Graham. TAIR10: arogenate dehydrogenase \| chr5:13233391-13235522 FORWARD LENGTH=640	SoyBase	E_val: 0	ISS
GO:0006567	GO-bp	Annotation by Michelle Graham. GO Biological Process: threonine catabolic process	SoyBase	N/A	ISS
GO:0006571	GO-bp	Annotation by Michelle Graham. GO Biological Process: tyrosine biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004665	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0008977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase activity	SoyBase	N/A	ISS
KOG2380	KOG	Prephenate dehydrogenase (NADP+)	JGI		ISS
PTHR11811	Panther	6-PHOSPHOGLUCONATE DEHYDROGENASE	JGI		ISS
PTHR11811:SF19	Panther	3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED	JGI		ISS
PF02153	PFAM	Prephenate dehydrogenase	JGI		ISS
UniRef100_G7JGK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arogenate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JGK2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A704	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A704 related cluster n=1 Tax=unknown RepID=UPI000233A704	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07870

Paralog	Evidence	Comments
Glyma17g13151	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g014000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g07870

Limit To All Plant Sequences

>Glyma05g07870.2   sequence type=transcript   gene model=Glyma05g07870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCATATAAGTTTAAAAAAGTAGGATTAGGAAGGTAGCCGTGAGCCCCACTTACTTACATTAGCTGGTGCTTGTATTTTCTTTTTATTTTACTTTACCGTGTGGGCGCTAGAAGAAAGGTTTAGTAATACAAATACATCTCCGGCGATGGCTGTTTCCACCTTTCAGGCGGCGCCACCGAAACCCACATTGGGTTCCAGTCTTCTTAGCCGTCGTATGAAACACGTTCCCTTCTCCTTGTCATTTTTCTCCGCTCCTAAGACCATCTCTTCTTACAGACCCATCCTACGCATTCGCGCCATCGACGCGGCCCAGCCCTTCGACTACGAGTCCAGAATGGCCCAACAGTTCCACGACTCCCAGAAGCTGAAGATCGCCATCGTGGGCTTCGGCAACTTCGGGCAGTTCCTGGCCCAAACCCTCGTCCGCCAGGGCCACACCGTCCTGGCCCACTCCCGCTCCGACCACTCCCTCGCGGCCCAACAACTCGGCGTCACCTTCTTCCCAAACCCCCACGATCTCTGCGAGGAACACCCCGAAGTGATTCTCTTATGCTCCTCCATCATCTCCACCCAGCGCGTGCTCCTCACTCTCCCCCTCCAGCGCTTAAAACGCAGCACACTCTTCGTCGACGTGCTTTCCGTCAAAGAGTTCCCCAAAAACCTCCTTCTCCACGCGCTCCCCTCCGATTTCGATGTTCTCTGCACCCACCCCATGTTCGGCCCACAGAGCGCCCCCCGCGCTTGGACCGGCCTCCCCTTCGTCTACGAGAAGGTCCGAATCGGCTCCGACGAGCACCGAATCGCCCGCTGCGAGAAATTCCTCGGCATTTTCGCGAGGGAGGGGTGCAGGATGGTGGAGATGAGCTGCGCCGACCACGATAAGTTCGCTGCCGGGTCGCAGTTCATAACTCACACCGTTGGTAGGGTTTTGGAGATGCTTACGGTGGAGTCAACTCCGATTAACACGAAAGGTTACGAGTCGTTGTTGAATTTGGTGGAGAACACTTCCGGGGACAGTTTTGATCTCTTCTATGGGTTGTTTATGTATAATAAGAACTCGCTGGAGATGCTGGAGAGGTTGGATTTCGCCTTCGAGGACTTGAGGAAACAGCTCATGGGGCGTTTGCATGATGTTGTTAGAGAGCAGTTGTTTGATAATGCTGGAATGGGAAAGGTGCAGAGTTTGCCTGATGAATATGTCCATCAACTGCTGCTCAAGAATGGTCAAAATGGTTCTGCTGCACCTGTGCTATCACTGCCCTCCAATGATCTGAGATCCAGTGATGTTGTTAAACTCTACAACTACAAGTCAAATGATGCAAACCAGTCTGATGACAAAACCAAGCTCAAGATTGCAATTGTTGGTTTTGGCAACTTCGGACAGTTTCTTGCAAAAACTTTTGTGCGTCATGGTCATCAAGTGTTGGCATACTCTAGATCAGATTACTCTCACGTGGCTCAAGAATTGGGGGTTTCATATTTCAATAACATTGACGATCTTTGTGAACAACATCCAGAAGTGATTTTACTTTGCACTTCAATCCTTTCCACAGAAAAAGTTCTTAAATCATTGCCCGTGCAAAGATTGAAGAGAAGTACTTTGTTTGTGGATGTACTTTCTGTCAAGGAATTTCCTAGAAACTTGTTTCTTCATCATTTGCCACATAATTTTGATATTCTCTGCACTCATCCTATGTTTGGGCCAGAGAGTGGAAAAAATGGGTGGAATGGTCTTGCTTTTGTTTATGATAAAGTTAGAATAGGAATAGATGAATCAAGAACATCACGGTGTGATCAGTTTCTTGACATTTTTGCTAGTGAAGGGTGCCGAATGGTTGAAATGTCATGTGCTGAACATGATTGGCATGCAGCTGGATCACAATTTATCACGCATACTACCGGAAGATTTTTAGAAAAACTGGAGTTGGAGGGAACGCCAATTGACACAAAGGGCTATGAGACTTTGTTGAGTTTGGTGGAAAATACTGCTGGAGATAGTTTTGATCTATACTATGGTTTGTTCTTGTATAATATAAATGCCATGGAGCAACTAGAAAGATTTGATCTGGCTTTTGAGTCTGTGAAGAAGGAGCTTTTTGATCGTCTGCATGGCTTCTACCGACAGCAAGTATTTAAACATGAAGAAAAACTCCATGATTTGCCAGAGAGGCCTATGTTGTCTAAGATATCTGAAGATAAATAAATCTTGGCCATGATCCATAACAGTAAAGCTAACTACTTTAACTGTAGAGTACTTGCCATCAAGCTGAAGTAGCCTCCTGCGTCCCCACTGAGTCCAATGGTGGGAGTCTTAGACAGTTAAACCAACATGGACTTTTCACAGATTGACATATCTAGATTACAATTAAGGCGGTCAAGGAGAAGATGAATGGAAAGGTCAATACTTTAAGCATTTCTCGAAGCTGATTGAGACACCAAGTAAATTTGATTCAGG

Coding sequences of Glyma05g07870

Limit To All Plant Sequences

>Glyma05g07870.1   sequence type=CDS   gene model=Glyma05g07870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTTCCACCTTTCAGGCGGCGCCACCGAAACCCACATTGGGTTCCAGTCTTCTTAGCCGTCGTATGAAACACGTTCCCTTCTCCTTGTCATTTTTCTCCGCTCCTAAGACCATCTCTTCTTACAGACCCATCCTACGCATTCGCGCCATCGACGCGGCCCAGCCCTTCGACTACGAGTCCAGAATGGCCCAACAGTTCCACGACTCCCAGAAGCTGAAGATCGCCATCGTGGGCTTCGGCAACTTCGGGCAGTTCCTGGCCCAAACCCTCGTCCGCCAGGGCCACACCGTCCTGGCCCACTCCCGCTCCGACCACTCCCTCGCGGCCCAACAACTCGGCGTCACCTTCTTCCCAAACCCCCACGATCTCTGCGAGGAACACCCCGAAGTGATTCTCTTATGCTCCTCCATCATCTCCACCCAGCGCGTGCTCCTCACTCTCCCCCTCCAGCGCTTAAAACGCAGCACACTCTTCGTCGACGTGCTTTCCGTCAAAGAGTTCCCCAAAAACCTCCTTCTCCACGCGCTCCCCTCCGATTTCGATGTTCTCTGCACCCACCCCATGTTCGGCCCACAGAGCGCCCCCCGCGCTTGGACCGGCCTCCCCTTCGTCTACGAGAAGGTCCGAATCGGCTCCGACGAGCACCGAATCGCCCGCTGCGAGAAATTCCTCGGCATTTTCGCGAGGGAGGGGTGCAGGATGGTGGAGATGAGCTGCGCCGACCACGATAAGTTCGCTGCCGGGTCGCAGTTCATAACTCACACCGTTGGTAGGGTTTTGGAGATGCTTACGGTGGAGTCAACTCCGATTAACACGAAAGGTTACGAGTCGTTGTTGAATTTGGTGGAGAACACTTCCGGGGACAGTTTTGATCTCTTCTATGGGTTGTTTATGTATAATAAGAACTCGCTGGAGATGCTGGAGAGGTTGGATTTCGCCTTCGAGGACTTGAGGAAACAGCTCATGGGGCGTTTGCATGATGTTGTTAGAGAGCAGTTGTTTGATAATGCTGGAATGGGAAAGGTGCAGAGTTTGCCTGATGAATATGTCCATCAACTGCTGCTCAAGAATGGTCAAAATGGTTCTGCTGCACCTGTGCTATCACTGCCCTCCAATGATCTGAGATCCAGTGATGTTGTTAAACTCTACAACTACAAGTCAAATGATGCAAACCAGTCTGATGACAAAACCAAGCTCAAGATTGCAATTGTTGGTTTTGGCAACTTCGGACAGTTTCTTGCAAAAACTTTTGTGCGTCATGGTCATCAAGTGTTGGCATACTCTAGATCAGATTACTCTCACGTGGCTCAAGAATTGGGGGTTTCATATTTCAATAACATTGACGATCTTTGTGAACAACATCCAGAAGTGATTTTACTTTGCACTTCAATCCTTTCCACAGAAAAAGTTCTTAAATCATTGCCCGTGCAAAGATTGAAGAGAAGTACTTTGTTTGTGGATGTACTTTCTGTCAAGGAATTTCCTAGAAACTTGTTTCTTCATCATTTGCCACATAATTTTGATATTCTCTGCACTCATCCTATGTTTGGGCCAGAGAGTGGAAAAAATGGGTGGAATGGTCTTGCTTTTGTTTATGATAAAGTTAGAATAGGAATAGATGAATCAAGAACATCACGGTGTGATCAGTTTCTTGACATTTTTGCTAGTGAAGGGTGCCGAATGGTTGAAATGTCATGTGCTGAACATGATTGGCATGCAGCTGGATCACAATTTATCACGCATACTACCGGAAGATTTTTAGAAAAACTGGAGTTGGAGGGAACGCCAATTGACACAAAGGGCTATGAGACTTTGTTGAGTTTGGTGGAAAATACTGCTGGAGATAGTTTTGATCTATACTATGGTTTGTTCTTGTATAATATAAATGCCATGGAGCAACTAGAAAGATTTGATCTGGCTTTTGAGTCTGTGAAGAAGGAGCTTTTTGATCGTCTGCATGGCTTCTACCGACAGCAAGTATTTAAACATGAAGAAAAACTCCATGATTTGCCAGAGAGGCCTATGTTGTCTAAGATATCTGAAGATAAATAA

>Glyma05g07870.2   sequence type=CDS   gene model=Glyma05g07870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTTCCACCTTTCAGGCGGCGCCACCGAAACCCACATTGGGTTCCAGTCTTCTTAGCCGTCGTATGAAACACGTTCCCTTCTCCTTGTCATTTTTCTCCGCTCCTAAGACCATCTCTTCTTACAGACCCATCCTACGCATTCGCGCCATCGACGCGGCCCAGCCCTTCGACTACGAGTCCAGAATGGCCCAACAGTTCCACGACTCCCAGAAGCTGAAGATCGCCATCGTGGGCTTCGGCAACTTCGGGCAGTTCCTGGCCCAAACCCTCGTCCGCCAGGGCCACACCGTCCTGGCCCACTCCCGCTCCGACCACTCCCTCGCGGCCCAACAACTCGGCGTCACCTTCTTCCCAAACCCCCACGATCTCTGCGAGGAACACCCCGAAGTGATTCTCTTATGCTCCTCCATCATCTCCACCCAGCGCGTGCTCCTCACTCTCCCCCTCCAGCGCTTAAAACGCAGCACACTCTTCGTCGACGTGCTTTCCGTCAAAGAGTTCCCCAAAAACCTCCTTCTCCACGCGCTCCCCTCCGATTTCGATGTTCTCTGCACCCACCCCATGTTCGGCCCACAGAGCGCCCCCCGCGCTTGGACCGGCCTCCCCTTCGTCTACGAGAAGGTCCGAATCGGCTCCGACGAGCACCGAATCGCCCGCTGCGAGAAATTCCTCGGCATTTTCGCGAGGGAGGGGTGCAGGATGGTGGAGATGAGCTGCGCCGACCACGATAAGTTCGCTGCCGGGTCGCAGTTCATAACTCACACCGTTGGTAGGGTTTTGGAGATGCTTACGGTGGAGTCAACTCCGATTAACACGAAAGGTTACGAGTCGTTGTTGAATTTGGTGGAGAACACTTCCGGGGACAGTTTTGATCTCTTCTATGGGTTGTTTATGTATAATAAGAACTCGCTGGAGATGCTGGAGAGGTTGGATTTCGCCTTCGAGGACTTGAGGAAACAGCTCATGGGGCGTTTGCATGATGTTGTTAGAGAGCAGTTGTTTGATAATGCTGGAATGGGAAAGGTGCAGAGTTTGCCTGATGAATATGTCCATCAACTGCTGCTCAAGAATGGTCAAAATGGTTCTGCTGCACCTGTGCTATCACTGCCCTCCAATGATCTGAGATCCAGTGATGTTGTTAAACTCTACAACTACAAGTCAAATGATGCAAACCAGTCTGATGACAAAACCAAGCTCAAGATTGCAATTGTTGGTTTTGGCAACTTCGGACAGTTTCTTGCAAAAACTTTTGTGCGTCATGGTCATCAAGTGTTGGCATACTCTAGATCAGATTACTCTCACGTGGCTCAAGAATTGGGGGTTTCATATTTCAATAACATTGACGATCTTTGTGAACAACATCCAGAAGTGATTTTACTTTGCACTTCAATCCTTTCCACAGAAAAAGTTCTTAAATCATTGCCCGTGCAAAGATTGAAGAGAAGTACTTTGTTTGTGGATGTACTTTCTGTCAAGGAATTTCCTAGAAACTTGTTTCTTCATCATTTGCCACATAATTTTGATATTCTCTGCACTCATCCTATGTTTGGGCCAGAGAGTGGAAAAAATGGGTGGAATGGTCTTGCTTTTGTTTATGATAAAGTTAGAATAGGAATAGATGAATCAAGAACATCACGGTGTGATCAGTTTCTTGACATTTTTGCTAGTGAAGGGTGCCGAATGGTTGAAATGTCATGTGCTGAACATGATTGGCATGCAGCTGGATCACAATTTATCACGCATACTACCGGAAGATTTTTAGAAAAACTGGAGTTGGAGGGAACGCCAATTGACACAAAGGGCTATGAGACTTTGTTGAGTTTGGTGGAAAATACTGCTGGAGATAGTTTTGATCTATACTATGGTTTGTTCTTGTATAATATAAATGCCATGGAGCAACTAGAAAGATTTGATCTGGCTTTTGAGTCTGTGAAGAAGGAGCTTTTTGATCGTCTGCATGGCTTCTACCGACAGCAAGTATTTAAACATGAAGAAAAACTCCATGATTTGCCAGAGAGGCCTATGTTGTCTAAGATATCTGAAGATAAATAA

Predicted protein sequences of Glyma05g07870

Limit To All Plant Sequences

>Glyma05g07870.1   sequence type=predicted peptide   gene model=Glyma05g07870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSTFQAAPPKPTLGSSLLSRRMKHVPFSLSFFSAPKTISSYRPILRIRAIDAAQPFDYESRMAQQFHDSQKLKIAIVGFGNFGQFLAQTLVRQGHTVLAHSRSDHSLAAQQLGVTFFPNPHDLCEEHPEVILLCSSIISTQRVLLTLPLQRLKRSTLFVDVLSVKEFPKNLLLHALPSDFDVLCTHPMFGPQSAPRAWTGLPFVYEKVRIGSDEHRIARCEKFLGIFAREGCRMVEMSCADHDKFAAGSQFITHTVGRVLEMLTVESTPINTKGYESLLNLVENTSGDSFDLFYGLFMYNKNSLEMLERLDFAFEDLRKQLMGRLHDVVREQLFDNAGMGKVQSLPDEYVHQLLLKNGQNGSAAPVLSLPSNDLRSSDVVKLYNYKSNDANQSDDKTKLKIAIVGFGNFGQFLAKTFVRHGHQVLAYSRSDYSHVAQELGVSYFNNIDDLCEQHPEVILLCTSILSTEKVLKSLPVQRLKRSTLFVDVLSVKEFPRNLFLHHLPHNFDILCTHPMFGPESGKNGWNGLAFVYDKVRIGIDESRTSRCDQFLDIFASEGCRMVEMSCAEHDWHAAGSQFITHTTGRFLEKLELEGTPIDTKGYETLLSLVENTAGDSFDLYYGLFLYNINAMEQLERFDLAFESVKKELFDRLHGFYRQQVFKHEEKLHDLPERPMLSKISEDK*

>Glyma05g07870.2   sequence type=predicted peptide   gene model=Glyma05g07870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSTFQAAPPKPTLGSSLLSRRMKHVPFSLSFFSAPKTISSYRPILRIRAIDAAQPFDYESRMAQQFHDSQKLKIAIVGFGNFGQFLAQTLVRQGHTVLAHSRSDHSLAAQQLGVTFFPNPHDLCEEHPEVILLCSSIISTQRVLLTLPLQRLKRSTLFVDVLSVKEFPKNLLLHALPSDFDVLCTHPMFGPQSAPRAWTGLPFVYEKVRIGSDEHRIARCEKFLGIFAREGCRMVEMSCADHDKFAAGSQFITHTVGRVLEMLTVESTPINTKGYESLLNLVENTSGDSFDLFYGLFMYNKNSLEMLERLDFAFEDLRKQLMGRLHDVVREQLFDNAGMGKVQSLPDEYVHQLLLKNGQNGSAAPVLSLPSNDLRSSDVVKLYNYKSNDANQSDDKTKLKIAIVGFGNFGQFLAKTFVRHGHQVLAYSRSDYSHVAQELGVSYFNNIDDLCEQHPEVILLCTSILSTEKVLKSLPVQRLKRSTLFVDVLSVKEFPRNLFLHHLPHNFDILCTHPMFGPESGKNGWNGLAFVYDKVRIGIDESRTSRCDQFLDIFASEGCRMVEMSCAEHDWHAAGSQFITHTTGRFLEKLELEGTPIDTKGYETLLSLVENTAGDSFDLYYGLFLYNINAMEQLERFDLAFESVKKELFDRLHGFYRQQVFKHEEKLHDLPERPMLSKISEDK*

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