Glyma05g07800 - SoyBase

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Report for Sequence Feature Glyma05g07800

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7766589
stop:	7768816
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68780	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr1:25831881-25833335 REVERSE LENGTH=432	SoyBase	E_val: 7.00E-144	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
KOG4579	KOG	Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_B9SEG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SEG8_RICCO	SoyBase	E_val: 1.00E-158	ISS
UniRef100_I1K192	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K192_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07800

Paralog	Evidence	Comments
Glyma17g13210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g014600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07800

Limit To All Plant Sequences

>Glyma05g07800.1   sequence type=CDS   gene model=Glyma05g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATAAGGTTTTTATCATGCAAGTGCCACTATGTTCTTTGCTTTGTGTTCCTCGTTTTGTCTTTTCTTTGTAAGGGCCAAGACTCTTCATTTTCACCAATGAAGAACAAAGAGAAGGAAGCCATTTACTCTGTTATTCAAGGGTTTGTTGGAAAGTGGTGGAACGGTTCATATCTTTATCCAGATCCTTGTGGGTGGACTCCTGTACAGGGAGTTTCCTGTGAGCAATATGATGATGGCTTCTGGTATGTAAGCACTGTAAACTTTGGACCAGTTTTTGACAACTCTCTCGTGTGCAGCCATGAGGCTCAATTCCCTCAACAACTATTCAACCTCAAGCACCTAAAAGTCCTCTCACTGTCCACTTGCTTCCATTCTCCTACCAAAAATCCTGTTAAACTCCCTCTTTCAAAGTGGGACAAGTTCTCACACAGTTTGGAGTCTTTAACACTTAGATCAAACCCTGGTCTTGTTGGCACCATCCCACCAGCAATTGGCAGCCTCAAGAATCTTCAATCACTTCTACTTCTAGAAAATGGGCTAAGTGGTGAACTACCACTAAGTATTGGAAATTTGGTCAAGTTGAGGCAACTAGTCCTTGCAGGAAATAATTTGGAAGGTGAGGTTCCAGCCAACTATGGAAGGCTTTCTGAGCTTTTAATATTTGATGCAAGCAGGAACAATCTATCAGGAGTTTTTCCATCAACACTTGGACTTTTGGATTCACTTCTAAAGCTTGATTTTAGTAACAACATGCTTGAGGGAGAGTTGCCAAGGGAGCTAGGAAGGCTAAAGAATCTTACTTTACTTGATATAAGTCATAACAAACTTAGAGGTGGGTTGGTTAGGACAATCAAAGAACTTGTTTCCTTAAAGCATTTGGTTCTGTCCAACAACCCTATAGGGGGTGATCTCTTGGGGGTTAAGTGGGAAAATTTCCAAAACTTAGAAGCATTGGACCTTTCCAACATAGGTTTGGAAGGAAGTGTCCCAAAGTCCATGGCAAAAATGAAAAGGCTTAGGTTTCTGGACCTCAGCAACAACGACCTTTGTGGAAGTCTCTCTAGAAGTTTGGAAAAACTGCCATGTCTTACAGCTCTCCATGTAAATGGAAACAACTTGACAGGGAGACTTGAGTTCTCAGAGAGGTTTTACATGAAAATGGGAATGCGTTTTGCAGCTTGGAATAATACAAATCTCTGTTGCATGGCCAAACCAACGACGCACGAAATGCCTTATGGAGTAAAACCTTGTGTGCAGAAGAACATCACAATATCTGAAGGGGTTTCAACTGTTAAGATGAGTGAGGGGAATTACGAGGATTCCTTTGTAGTGGCCTCTTTGGGAGGTTCAGGCTTTTATTATGGACTTTGGTGTCTTTTCACTGTAAATGGAGTTCTTTATGTTTTCCTGTGGGATATGTTATTTTAG

Predicted protein sequences of Glyma05g07800

Limit To All Plant Sequences

>Glyma05g07800.1   sequence type=predicted peptide   gene model=Glyma05g07800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRFLSCKCHYVLCFVFLVLSFLCKGQDSSFSPMKNKEKEAIYSVIQGFVGKWWNGSYLYPDPCGWTPVQGVSCEQYDDGFWYVSTVNFGPVFDNSLVCSHEAQFPQQLFNLKHLKVLSLSTCFHSPTKNPVKLPLSKWDKFSHSLESLTLRSNPGLVGTIPPAIGSLKNLQSLLLLENGLSGELPLSIGNLVKLRQLVLAGNNLEGEVPANYGRLSELLIFDASRNNLSGVFPSTLGLLDSLLKLDFSNNMLEGELPRELGRLKNLTLLDISHNKLRGGLVRTIKELVSLKHLVLSNNPIGGDLLGVKWENFQNLEALDLSNIGLEGSVPKSMAKMKRLRFLDLSNNDLCGSLSRSLEKLPCLTALHVNGNNLTGRLEFSERFYMKMGMRFAAWNNTNLCCMAKPTTHEMPYGVKPCVQKNITISEGVSTVKMSEGNYEDSFVVASLGGSGFYYGLWCLFTVNGVLYVFLWDMLF*

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