Glyma05g07720 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma05g07720): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma05g07720): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma05g07720

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7701665
stop:	7702729
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18530	AT	Annotation by Michelle Graham. TAIR10: EF hand calcium-binding protein family \| chr1:6376783-6377256 FORWARD LENGTH=157	SoyBase	E_val: 1.00E-82	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF40	Panther	CALMODULIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_B9RE62	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9RE62_RICCO	SoyBase	E_val: 4.00E-83	ISS
UniRef100_I1K183	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K183_SOYBN	SoyBase	E_val: 3.00E-111	ISS

Expression Patterns of Glyma05g07720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g07720 not represented in the dataset	Glyma05g07720 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g07720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g015500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07720

Limit To All Plant Sequences

>Glyma05g07720.1   sequence type=CDS   gene model=Glyma05g07720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCAAAGCTTCAAGTTCAGCAGCTTAATCAGTTAAGGGAGATTTTCGGTCGATTTGACATGGACTCAGATGGAAGCCTAACAATGCTAGAGCTAGCAGCACTTCTTAGGTCTCTGGGGCTGAAGCCCTCGGGTGACCAAGTCCAAGCACTGTTAGCCAACATGGACTCAAACGCCAATGGCAAAGTGGAGTTTGATGAATTGATAAGAGCCATATTACCTGACATAAATGCACAGGTTTTGCTGAACCAAGAACAGCTCCTAGGGGTGTTCAAGTGCTTCGATCGCGACGGCAACGGTTACATATCGGCCGCAGAGTTGGCCGGGGCAATGGCCAAAATGGGCCAGCCACTCACGTACCGAGAGCTCACGGAGATGATCAAAGAGGCTGACACGGATGGGGATGGTGTTATTAGCTTCACTGAGTTTGCCACTATCATGGCTCGCTCTGCTTCTGATTTTCTAGGCCTCTCGTTCTGCTGA

Predicted protein sequences of Glyma05g07720

Limit To All Plant Sequences

>Glyma05g07720.1   sequence type=predicted peptide   gene model=Glyma05g07720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKLQVQQLNQLREIFGRFDMDSDGSLTMLELAALLRSLGLKPSGDQVQALLANMDSNANGKVEFDELIRAILPDINAQVLLNQEQLLGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFTEFATIMARSASDFLGLSFC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain