Glyma05g07680 - SoyBase

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Report for Sequence Feature Glyma05g07680

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7673642
stop:	7676903
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23060	AT	Annotation by Michelle Graham. TAIR10: calcium sensing receptor \| chr5:7736760-7738412 REVERSE LENGTH=387	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009704	GO-bp	Annotation by Michelle Graham. GO Biological Process: de-etiolation	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0015994	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process	SoyBase	N/A	ISS
GO:0019216	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0031408	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0071277	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to calcium ion	SoyBase	N/A	ISS
GO:0090333	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal closure	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
PF00581	PFAM	Rhodanese-like domain	JGI		ISS
UniRef100_B0FPA3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Extracellular Ca2+ sensing receptor n=1 Tax=Glycine max RepID=B0FPA3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K180	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K180_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g07680 not represented in the dataset	Glyma05g07680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07680

Paralog	Evidence	Comments
Glyma17g09170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g016000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g07680

Limit To All Plant Sequences

>Glyma05g07680.2   sequence type=transcript   gene model=Glyma05g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTATCTAAAACAAAAATATATTAATATATAATCAAGACTCAAACTGGCACAAGTGTCTATTCCAAGTTGGATATTAGAATTTTCCTTTGTCCACCAAAGAGCATGCCATGTGGAGTGGTGATAGTTTTGGAGCCTCAAATATAGATGGTGCATAGGTGGACATAAAAAGCAATGAAAACTCTGGCAGCCCTTTGGATTTTGGCCACACATCTCTGATCACTCTATAGACCACTTCGTTGATCTATCATTCTTCATCAACCAACCAGCCTCCAAAGTCAGTGAATAGTGAGTGAGTGAGTAGCAGCTAGCAATGGAAATTACTGCCATGGCTTCTTCAGCTACTCCTCCACGACCTTCTCTTCCAACTCCTTCCACTTCTCCACACACAGTAGTCACCACCACCTTTAGCAAACCTCAACTCAGACGCTCTCACATAGCACTACCAACTTCAACCACCATTTCATTGCTCGCTCTCTTCGCCCCTCCAAACGAAGCCAAAGCCGCTGTCAGCATCGCCAAGGACCAGATTGTCTCTTCTCTCACCCAAGTTCAGGAAATGGGTTCGGGTGTGCTGGACACGGCACAGCGTGTTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCGATAGTGCAGCAGGCTGGAGAAGAGGCCTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCACTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCGAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCGGGTCTGTCATCTTGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCTACACAGAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAGGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGCTGCCATTCCTTTGGAAGAACTGCAAAGCAAGCTCAGGGGGCAGGTCAAGAATGTTAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGACTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACGCTAACCAGCCTTGGCTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGATTAGGAACAGATTCGTATAACTTCTCGTTTGCAGAGGTGCTGTCACCGTCTAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGACTAACTTTTTTCTGTTCTAAAATCTTGTGCAAATAGAAATTCACTCTTGTGCATGCTTGAGTCATCCAATATATTTATTTTGATTATTTCCCATAATTATTTCATCAATGTCTAAGTCTTTTATTTCCAACCTTTTTCCCTCTGTGGGTGTTTTGAGTGGCTACGGCTACGTGGTCTTCCCCTAAGTTGCAACGACTGTGGAGAATGCCAAAAGGTTGAAGTTGATGATGTTTAAGTGGGTGTGTGTTTGATTTAAAACTGGAAGGTTTCCAAACAGCCGTTGAATCAAAAGCTTCAAATTCTTAATTCTCACAAGACATATATAAGAATGTGTGTCCGTTCAATCTAATATTAAACCAAGGGGTTGGAGTTGAA

Coding sequences of Glyma05g07680

Limit To All Plant Sequences

>Glyma05g07680.1   sequence type=CDS   gene model=Glyma05g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTACTGCCATGGCTTCTTCAGCTACTCCTCCACGACCTTCTCTTCCAACTCCTTCCACTTCTCCACACACAGTAGTCACCACCACCTTTAGCAAACCTCAACTCAGACGCTCTCACATAGCACTACCAACTTCAACCACCATTTCATTGCTCGCTCTCTTCGCCCCTCCAAACGAAGCCAAAGCCGCTGTCAGCATCGCCAAGGACCAGATTGTCTCTTCTCTCACCCAAGTGGAGAAAACGCTGGATCAGGTTCAGGAAATGGGTTCGGGTGTGCTGGACACGGCACAGCGTGTTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCGATAGTGCAGCAGGCTGGAGAAGAGGCCTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCACTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCGAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCGGGTCTGTCATCTTGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCTACACAGAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAGGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGCTGCCATTCCTTTGGAAGAACTGCAAAGCAAGCTCAGGGGGCAGGTCAAGAATGTTAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGACTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACGCTAACCAGCCTTGGCTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGATTAGGAACAGATTCGTATAACTTCTCGTTTGCAGAGGTGCTGTCACCGTCTAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGACTAA

>Glyma05g07680.2   sequence type=CDS   gene model=Glyma05g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTACTGCCATGGCTTCTTCAGCTACTCCTCCACGACCTTCTCTTCCAACTCCTTCCACTTCTCCACACACAGTAGTCACCACCACCTTTAGCAAACCTCAACTCAGACGCTCTCACATAGCACTACCAACTTCAACCACCATTTCATTGCTCGCTCTCTTCGCCCCTCCAAACGAAGCCAAAGCCGCTGTCAGCATCGCCAAGGACCAGATTGTCTCTTCTCTCACCCAAGTTCAGGAAATGGGTTCGGGTGTGCTGGACACGGCACAGCGTGTTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCGATAGTGCAGCAGGCTGGAGAAGAGGCCTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCACTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCGAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCGGGTCTGTCATCTTGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCTACACAGAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAGGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGCTGCCATTCCTTTGGAAGAACTGCAAAGCAAGCTCAGGGGGCAGGTCAAGAATGTTAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGACTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACGCTAACCAGCCTTGGCTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGATTAGGAACAGATTCGTATAACTTCTCGTTTGCAGAGGTGCTGTCACCGTCTAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGACTAA

Predicted protein sequences of Glyma05g07680

Limit To All Plant Sequences

>Glyma05g07680.1   sequence type=predicted peptide   gene model=Glyma05g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITAMASSATPPRPSLPTPSTSPHTVVTTTFSKPQLRRSHIALPTSTTISLLALFAPPNEAKAAVSIAKDQIVSSLTQVEKTLDQVQEMGSGVLDTAQRVAEVIGNALKPGIETALPIVQQAGEEALKIASPAISEASKKAQEALQSSGVDTEPVITAAKTVADAAQQTTKVIEVAKPIASSTVETISSSDPTVIAGTAGALFVAYLLIPPIGSVILSNLRGYKGDLTPAQALDLISTQNYVLIDIRSEKDKDRAGIPRLPSNAKNRMAAIPLEELQSKLRGQVKNVKKLEAEIVALKISYLKKINKGTNVVILDSYSDVAKTVGRTLTSLGFKNTWIVADGFSGNKGWLQSRLGTDSYNFSFAEVLSPSRVIPAAVRSFGTTSQSSTKLLPGAD*

>Glyma05g07680.2   sequence type=predicted peptide   gene model=Glyma05g07680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITAMASSATPPRPSLPTPSTSPHTVVTTTFSKPQLRRSHIALPTSTTISLLALFAPPNEAKAAVSIAKDQIVSSLTQVQEMGSGVLDTAQRVAEVIGNALKPGIETALPIVQQAGEEALKIASPAISEASKKAQEALQSSGVDTEPVITAAKTVADAAQQTTKVIEVAKPIASSTVETISSSDPTVIAGTAGALFVAYLLIPPIGSVILSNLRGYKGDLTPAQALDLISTQNYVLIDIRSEKDKDRAGIPRLPSNAKNRMAAIPLEELQSKLRGQVKNVKKLEAEIVALKISYLKKINKGTNVVILDSYSDVAKTVGRTLTSLGFKNTWIVADGFSGNKGWLQSRLGTDSYNFSFAEVLSPSRVIPAAVRSFGTTSQSSTKLLPGAD*

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