Glyma05g07630 - SoyBase

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Report for Sequence Feature Glyma05g07630

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7648486
stop:	7650174
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74010	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent phosphotriesterase superfamily protein \| chr1:27832432-27834017 REVERSE LENGTH=325	SoyBase	E_val: 1.00E-72	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0016844	GO-mf	Annotation by Michelle Graham. GO Molecular Function: strictosidine synthase activity	SoyBase	N/A	ISS
KOG1520	KOG	Predicted alkaloid synthase/Surface mucin Hemomucin	JGI		ISS
PTHR10426	Panther	STRICTOSIDINE SYNTHASE-RELATED	JGI		ISS
PTHR10426:SF5	Panther	MUCIN-RELATED	JGI		ISS
PF03088	PFAM	Strictosidine synthase	JGI		ISS
UniRef100_G7JT37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Strictosidine synthase n=1 Tax=Medicago truncatula RepID=G7JT37_MEDTR	SoyBase	E_val: 2.00E-148	ISS
UniRef100_I1K173	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K173_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07630

Paralog	Evidence	Comments
Glyma17g09110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g016500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07630

Limit To All Plant Sequences

>Glyma05g07630.1   sequence type=CDS   gene model=Glyma05g07630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTCAAACATTGCAACAATGATAGCTATCTCTGCAATTTTTATGATTTTCTTCTTGTGTTCGCCATCAGTGGCTATATTAATCAGCAGGTTACCACTACCGTCACCGGTGACAGGCCCTGAGTCCGTAGCATTCGACCGGAACGGTGGAGGGCCATATGTTGGTGTTTCTGATGGAAGAATTCTCAAATATGCTGGTCCAGGCGAGGGTTTCAAGGAATATGCTTTCACTTCACCAAACAGGAACAAGACAATCTGTGATGGGCTTGCTGATTTCTCAGAACTCCAAGCAACATGTGGGAGGCCATTAGGATTACGTTTCAACCATCAAACAAACGAACTATACGTAGCGGATGCTTATTCTGGGCTTATCAAGATTGGACCCAATGGAGGGGCTCCAACCCAATGCTTTAAAGATATACAACCACAACAAGAGAATGTGAACACTACTCTTCAGTTTCTCGATGGCTTGGATGTAGACGTCAACACTGGAATCGTTTATTTCACCCAAGCTAGTGCTAACTACGGTTTCAAGGATGCTCAGGCACTACAAAGCAGTAGAGACCAATCTGGGAGCCTATTCTCACTGGATCCCAAAACGAACCAAACAAGAGTGTTGATGAGGGGTCTTGCATTGGCATCTGGGGTGGCAGTAAGCAGAGACGGGTCATTTGTGCTTGTTAGTGAATACTTGGCAAACAGAATTCAGAGATTTTGGCTAAGAGGGCCAAGAGCAAATTCTTCTGAACTATTCTTGCAACTCACTGGTAGACCAGACAACATTAGGAGCAACCAGAGAGGTCAATTTTGGGTGGCAGTGAATGGTGTTTTAGGACCAAATCCACCTCCTAGGCCCACTATTTTACCTGCTGGAGTCAGAATTAGTGAGAACGGTATCATTTTACGGATTGTTTCTCTTGTCCAGGAGTTTGGTAGTGAGGCAGTGAGTGAGATTCATGAGCATAACGGGACACTCTACTCTGGCTCCTTGCAAGCTTCCTATGTTCCCATTTCTGCTATGATCTAG

Predicted protein sequences of Glyma05g07630

Limit To All Plant Sequences

>Glyma05g07630.1   sequence type=predicted peptide   gene model=Glyma05g07630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSNIATMIAISAIFMIFFLCSPSVAILISRLPLPSPVTGPESVAFDRNGGGPYVGVSDGRILKYAGPGEGFKEYAFTSPNRNKTICDGLADFSELQATCGRPLGLRFNHQTNELYVADAYSGLIKIGPNGGAPTQCFKDIQPQQENVNTTLQFLDGLDVDVNTGIVYFTQASANYGFKDAQALQSSRDQSGSLFSLDPKTNQTRVLMRGLALASGVAVSRDGSFVLVSEYLANRIQRFWLRGPRANSSELFLQLTGRPDNIRSNQRGQFWVAVNGVLGPNPPPRPTILPAGVRISENGIILRIVSLVQEFGSEAVSEIHEHNGTLYSGSLQASYVPISAMI*

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