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Report for Sequence Feature Glyma05g07522

Feature Type:gene_model
Chromosome:Gm05
Start:7593943
stop:7594587
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g07522
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60830AT Annotation by Michelle Graham. TAIR10: basic leucine-zipper 70 | chr5:24472639-24473319 FORWARD LENGTH=206 SoyBaseE_val: 3.00E-24ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF60Panther SUBFAMILY NOT NAMED JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_B9RLH1UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLH1_RICCO SoyBaseE_val: 2.00E-28ISS
UniRef100_I1K164UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K164_SOYBN SoyBaseE_val: 3.00E-74ISS

Expression Patterns of Glyma05g07522
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g07522 not represented in the dataset
Glyma05g07522 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07522
ParalogEvidenceComments
Glyma17g09010 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07522 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g017400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g07522
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g07522
>Glyma05g07522.1   sequence type=CDS   gene model=Glyma05g07522   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGCAATGAAGATGATGAACTCCATGTAGCACCTTATGCTTCCTTAACACAGCGCCTTCACTATCATTCTCCAACCCAGAAACCTATCTTTACCTCAACAAACCTCTTGAACGTGGAAGCTGGTGAAGGCCATAATTTGAACCACATGGATCCACCTCATTGTTTGCATCATACTCCATTTTACTGCTCCCAATTTCAGCTTCCTAGCAACAGCAACAACCCAATTCAAATCCCACTCCATAAACCCTCTCCCAACATATCATCAAACAACAACAACAACAACAATTCTGACGAAGCAAAGGCTCTCCTTGATGACAGAAAGAAGAAGAGGATGTTCTCCAACAGAGAATCCGCTCGAAGGTCGCGGATGCGAAAGAAGCAACAAATTGAAGTCCTGCAGTACCATGTGGACAATCTGCAGACATTAAACCATCAACTGTCCCAAAAGATCATTTACTTGTTGGAATGTAACCAACAAATCCACCAACAGAATGCTCAGCTAAAAGAGAAAGTTTTCTCTCTTCAGGTAGCACTCTCTGACTTGTTGGCTACTTCTGGAAGTGCTGAGCAACCTCACCTCATCCCTAATGGCTTCCTAGCCGAGTCTTCGACTCGACCAATTGCGAGTTCCAGAACATAG
Predicted protein sequences of Glyma05g07522
>Glyma05g07522.1   sequence type=predicted peptide   gene model=Glyma05g07522   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECNEDDELHVAPYASLTQRLHYHSPTQKPIFTSTNLLNVEAGEGHNLNHMDPPHCLHHTPFYCSQFQLPSNSNNPIQIPLHKPSPNISSNNNNNNNSDEAKALLDDRKKKRMFSNRESARRSRMRKKQQIEVLQYHVDNLQTLNHQLSQKIIYLLECNQQIHQQNAQLKEKVFSLQVALSDLLATSGSAEQPHLIPNGFLAESSTRPIASSRT*






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