Glyma05g07490 - SoyBase

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Report for Sequence Feature Glyma05g07490

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7553613
stop:	7562857
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08130	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr5:2606655-2609571 REVERSE LENGTH=529	SoyBase	E_val: 4.00E-130	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009742	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010072	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF27	Panther	CENTROMERE-BINDING PROTEIN 1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_B9RLH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor BIM1, putative n=1 Tax=Ricinus communis RepID=B9RLH8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K161	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K161_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07490

Paralog	Evidence	Comments
Glyma17g08980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g017800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g07490

Limit To All Plant Sequences

>Glyma05g07490.2   sequence type=transcript   gene model=Glyma05g07490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTAACGTCGTTACCCGCCGCAACGACGTTTGTAAACGGAGTGCATGAGTTGACGGAGAAAGGAGATGAAATGGATGGAGAGAAGAGCTATATAAAAACATCTCTCATCTCAATTATGAATTCTGAACTCAAGACACAACATAGCATAGAAAGAGAAAGCGCAGGGTCCGACCCGATACCTCATCTTTCGCCCTAGTGCTCGTTTTCAGAGCTGCAAAGGAATCGACACAGAAAGTGATTAAAAAAGGGAGAAGATATCTTTGGTGTCAAACGCTCCCTGATTCTTCTGCTGTGGACTCCACTTCTCTACTGTTCCACCTCTCCACACTACGATTCTGTGAAATCTCTGAACGAACGCTCTGTAATTGGTGATTTTGGAGCCGAACTGTTTCGTCCAATGAAAATCAATCGCGAAAGTTTCCGTTGATAAGTCGTGGAGAATTTACTGGTAAAATTTGATCCAGTTAAAACAGTTATTCGTTGGCGAAATTGAGTGAATGCGTCTCCGATCTTCAGCCGGCCGGGGACGTAATCTGAGAAGATCTGAGAATTTTTAATACTAACCGAAGCTGCAAGTTCTCGAATCCCGTGTTCGTTTCCGAATTCAAACGGGATCGAATTCTATGAGATTTCATCTCCGGAAGGAGCGAAATTCAAAATTCCGTTGAATTACCGGGAAGGAAAAGGAAAACAGAAAAACGGAAAAGCATCATATTCAGGTTTTGATGGAGCTTCCTCAAGCACGCCCCCTTGGAACCGAAGGGAGGAAACCGACCCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACGAAAGCCAGTGCGAAGGAAGAAGCCACAGATGAAATATCATCGGTGGTTCAAAAGCCACGTTCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATTAGCCACATTTCATATGTTAATAATAATAATAATAATAATCAAAGGGTTCCAAAACCAGAGACATCATCCCTTTACGGGCGTCAAGCAACTAGTACGGATAGGAATGAAGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCGTCGGGGAAGAGGGGAAAGACAGGAAAGGAGAATAATGCGGGCGAGAAACCCTCTCTAGGAGAGTCTGCAGCAAAGCTAGGGCAGTGGACAACAACGGAGCGGACGTCACAGTCGTTTTCCAACAATCGTCACGGCAGCTTCAGCTCTCGCTCTTCGTCTCAGACAACTGGGCTGAAAAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCACAGAATGAAGTGCTAGAAAGCGAGGAAACATTTTTTCTCAAGAAAGAACCCTCCTCGAACACCCAAAGAGAACTGCTTGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCATTGAATATATTCATTTTTTGCAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAGATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAGTTTTCAACCTCGTGGCACCGATAATGGGTCAAGTCCATCACCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTCCAAGACAATGGATCATCAGGCTGGAAAAATGAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTCTTCACTCCAACCCAAATCGGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATCGGCATCTGATGCTGAGAACACCAAATATCAACCTTCAGTGGAATGTCAGACTATGACTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGCGTGTACTCAAAAGGGTTGTTACATACGCTTACACACGCATTGCAGAGTTCAGGGGTGGACTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGATCAAATGTACCAGTGTCAGTGTGTGGTGCTAAGGATGGTGCAGTTCCTTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACTTGCAGAAGTTAATTCGACCGTTATATTCATTCTTTCTTTATTACAATTCTTACTAATTATTTGGGGTAACTTTTTAAAATTAATTTTTGGAAGGGGTATTTTATGTCTTCTGCTGGCTTTATTATCCAGCGTGGGGGAGATCGACTGTACATTCAGTGTCTTCTTAGTTTGTTGGGATCATTAGGCTCACCCCAACAAAATAAAATGAATTATTTTAGTTTCTAAATCATATAAGTATAAAGGCTTCCATACTAATCGAGAAGCTATTTTTTAACCAAGGCTTCTATTCATGTAAAGATTGTAAACTCTCGCTCCGTTATTTGCTGCATATTGTTTTTCATTTGGTTTTGGTGGTTTAGTCAATCGTTATGAAATACTAGCATAAACTATAATGATACCTATTGTATGTATTTTTTTTAGAATATTTGGATAATAGCCAACAGGAGTTGAGTGAAT

Coding sequences of Glyma05g07490

Limit To All Plant Sequences

>Glyma05g07490.1   sequence type=CDS   gene model=Glyma05g07490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTCCTCAAGCACGCCCCCTTGGAACCGAAGGGAGGAAACCGACCCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACGAAAGCCAGTGCGAAGGAAGAAGCCACAGATGAAATATCATCGGTGGTTCAAAAGCCACGTTCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATTAGCCACATTTCATATGTTAATAATAATAATAATAATAATCAAAGGGTTCCAAAACCAGAGACATCATCCCTTTACGGGCGTCAAGCAACTAGTACGGATAGGAATGAAGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCGTCGGGGAAGAGGGGAAAGACAGGAAAGGAGAATAATGCGGGCGAGAAACCCTCTCTAGGAGAGTCTGCAGCAAAGCTAGGGCAGTGGACAACAACGGAGCGGACGTCACAGTCGTTTTCCAACAATCGTCACGGCAGCTTCAGCTCTCGCTCTTCGTCTCAGACAACTGGGCTGAAAAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCACAGAATGAAGTGCTAGAAAGCGAGGAAACATTTTTTCTCAAGAAAGAACCCTCCTCGAACACCCAAAGAGCAGAACTGCTTGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCATTGAATATATTCATTTTTTGCAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAGATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAGTTTTCAACCTCGTGGCACCGATAATGGGTCAAGTCCATCACCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTCCAAGACAATGGATCATCAGGCTGGAAAAATGAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTCTTCACTCCAACCCAAATCGGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATCGGCATCTGATGCTGAGAACACCAAATATCAACCTTCAGTGGAATGTCAGACTATGACTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGCGTGTACTCAAAAGGGTTGTTACATACGCTTACACACGCATTGCAGAGTTCAGGGGTGGACTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGATCAAATGTACCAGTGTCAGTGTGTGGTGCTAAGGATGGTGCAGTTCCTTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACTTGCAGAAGTTAA

>Glyma05g07490.2   sequence type=CDS   gene model=Glyma05g07490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTCCTCAAGCACGCCCCCTTGGAACCGAAGGGAGGAAACCGACCCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACGAAAGCCAGTGCGAAGGAAGAAGCCACAGATGAAATATCATCGGTGGTTCAAAAGCCACGTTCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTATAGTATTAGCCACATTTCATATGTTAATAATAATAATAATAATAATCAAAGGGTTCCAAAACCAGAGACATCATCCCTTTACGGGCGTCAAGCAACTAGTACGGATAGGAATGAAGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCGTCGGGGAAGAGGGGAAAGACAGGAAAGGAGAATAATGCGGGCGAGAAACCCTCTCTAGGAGAGTCTGCAGCAAAGCTAGGGCAGTGGACAACAACGGAGCGGACGTCACAGTCGTTTTCCAACAATCGTCACGGCAGCTTCAGCTCTCGCTCTTCGTCTCAGACAACTGGGCTGAAAAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCACAGAATGAAGTGCTAGAAAGCGAGGAAACATTTTTTCTCAAGAAAGAACCCTCCTCGAACACCCAAAGAGAACTGCTTGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCATTGAATATATTCATTTTTTGCAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAGATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAAGTTTTCAACCTCGTGGCACCGATAATGGGTCAAGTCCATCACCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTCCAAGACAATGGATCATCAGGCTGGAAAAATGAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTCTTCACTCCAACCCAAATCGGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATCGGCATCTGATGCTGAGAACACCAAATATCAACCTTCAGTGGAATGTCAGACTATGACTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGCGTGTACTCAAAAGGGTTGTTACATACGCTTACACACGCATTGCAGAGTTCAGGGGTGGACTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGATCAAATGTACCAGTGTCAGTGTGTGGTGCTAAGGATGGTGCAGTTCCTTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACTTGCAGAAGTTAA

Predicted protein sequences of Glyma05g07490

Limit To All Plant Sequences

>Glyma05g07490.1   sequence type=predicted peptide   gene model=Glyma05g07490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELPQARPLGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLQPLERVETKASAKEEATDEISSVVQKPRSPSVEHLLPGGIGTYSISHISYVNNNNNNNQRVPKPETSSLYGRQATSTDRNEENSNCSSYTSSGFTLWEESSGKRGKTGKENNAGEKPSLGESAAKLGQWTTTERTSQSFSNNRHGSFSSRSSSQTTGLKNQSFIEMMKSARDSAQNEVLESEETFFLKKEPSSNTQRAELLVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPERLMPWRNNDKPAESFQPRGTDNGSSPSPTIPGSTQNVESGLSTATTSKTMDHQAGKMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAENTKYQPSVECQTMTATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRSNVPVSVCGAKDGAVPSNNQKMMRSRVASSGKSDQAVKKLKTCRS*

>Glyma05g07490.2   sequence type=predicted peptide   gene model=Glyma05g07490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELPQARPLGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLQPLERVETKASAKEEATDEISSVVQKPRSPSVEHLLPGGIGTYSISHISYVNNNNNNNQRVPKPETSSLYGRQATSTDRNEENSNCSSYTSSGFTLWEESSGKRGKTGKENNAGEKPSLGESAAKLGQWTTTERTSQSFSNNRHGSFSSRSSSQTTGLKNQSFIEMMKSARDSAQNEVLESEETFFLKKEPSSNTQRELLVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPERLMPWRNNDKPAESFQPRGTDNGSSPSPTIPGSTQNVESGLSTATTSKTMDHQAGKMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAENTKYQPSVECQTMTATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRSNVPVSVCGAKDGAVPSNNQKMMRSRVASSGKSDQAVKKLKTCRS*

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