Glyma05g07480 - SoyBase

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Report for Sequence Feature Glyma05g07480

Feature Type:	gene_model
Chromosome:	Gm05
Start:	7544596
stop:	7548265
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g07480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15740	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr5:5134788-5136956 REVERSE LENGTH=508	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_G7IT24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase subunit a chloroplastic n=1 Tax=Medicago truncatula RepID=G7IT24_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A59F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A59F related cluster n=1 Tax=unknown RepID=UPI000233A59F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g07480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g07480

Paralog	Evidence	Comments
Glyma17g08970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g07480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g017900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g07480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g07480

Limit To All Plant Sequences

>Glyma05g07480.1   sequence type=CDS   gene model=Glyma05g07480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAGGGCGGAGTGGGAAGGTTTTATGGGTCTGAAGAAGTGGGAAAGTAAGGTTCCGAAGGTGGGAATGGGAATGGGTGTGTTAGGTTCGGGTTCGGGTTCGGGTTCGTCGCGGTCGAGAATGAAGATGTGGATGATACGGGCGACCACATCGGTGTTACTGTGGACCTGCATCGTTCAGTTAACGGCGTTGGGTGACATGTGGGGGCCGAGAGTTTTGAAAGGTTGGCCTTCTTGTTTCACTCACGAGTCTGCCGTTAGAGCAATGGATGTCGAGCTACCGTCACCGCGTCCTCCTCTTCTCCCTCCAAAGAGAGTTTATAAAAACAATGGTTATCTTATGGTCTCGTGCAATGGAGGACTCAACCAGATGAGAGCTGCGATATGTGACATGGTGGCTATTGCTCGATATTTAAATGTCACGCTTATAGTTCCTGAACTGGATAAAACATCCTTTTGGGCTGATCCCAGTGACTTCCAAGACATATTTGATGTGGATCATTTTATCACTTCCTTGAGAGATGAAGTGCGGATACTGAAAGAGTTGCCTCCCAGACTCAAGCTGAAAGTGGAGCGCGGGTTTCTTTACACCATGCCGCCTATTAGTTGGTCTGATATATCTTACTATAAGGATCAGATTCTACCCTTGATACAAAAGTACAAAGTTGTTCATTTAAATAGAACTGATGCTCGGTTGGCCAATAATGGTCAACCGCTGGAGATTCAGAAGCTGCGTTGCCGAGTTAATTTTAGTGGTCTGAGATTTACTTCTCAGATAGAGGAGTTGGGCAGAAAGGTGATCAGGCTTCTTAGGCAAAAGGGGCCATTTCTGGTGCTCCATTTGAGGTATGAGATGGACATGTTGGCATTTTCTGGCTGTACTCAAGGTTGTAACAGTGATGAGGTGGACGAATTGACAAGAATGAGATATGCTTATCCTTGGTGGAAGGAAAAAATAATTAATTCTGATTTGAAAAGAAAAGATGGTTTATGCCCTCTAACACCTGAGGAGACTGCCCTTACGCTTAAGGCTCTTGACATTGATCAGAACATTCAAATCTACATTGCAGCTGGGGAAATATATGGAGGGGAAAGGAGAATGGCAAGTCTAGCGAAGGAGTACCCAAAATTGGTCAGGAAGGAAACGCTGTTGGAGCCATCCGACCTTCAGTTCTTCCAAAATCATTCATCCCAGATGGCAGCATTGGATTATCTTGTCTCATTAGAGAGTGATATTTTTGTTCCCACATATGATGGAAATATGGCCAAAGTGGTTGAGGGCCACCGCAGATATCTTGGGTTCAAGAAAACGATTTTGTTGAACAGAAAACTCCTAGTCGAATTGATAGATCAATACAATAATGGAGTGCTGAACTGGGATGAATTCTCTTCAGCAGTGAAGGAAGCCCATGCCAATCGCATGGGTAGCCAAACCAAGAGGTTTGTAATCCCTGACAAGCCAAAAGAAGAGGATTATTTCTATGCCAACCCACAGGAGTGTTTGGAACCATCAGCATATGAACTGTTGGCGTTGAGTAGAACGTGA

Predicted protein sequences of Glyma05g07480

Limit To All Plant Sequences

>Glyma05g07480.1   sequence type=predicted peptide   gene model=Glyma05g07480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCRAEWEGFMGLKKWESKVPKVGMGMGVLGSGSGSGSSRSRMKMWMIRATTSVLLWTCIVQLTALGDMWGPRVLKGWPSCFTHESAVRAMDVELPSPRPPLLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSDFQDIFDVDHFITSLRDEVRILKELPPRLKLKVERGFLYTMPPISWSDISYYKDQILPLIQKYKVVHLNRTDARLANNGQPLEIQKLRCRVNFSGLRFTSQIEELGRKVIRLLRQKGPFLVLHLRYEMDMLAFSGCTQGCNSDEVDELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLKALDIDQNIQIYIAAGEIYGGERRMASLAKEYPKLVRKETLLEPSDLQFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKKTILLNRKLLVELIDQYNNGVLNWDEFSSAVKEAHANRMGSQTKRFVIPDKPKEEDYFYANPQECLEPSAYELLALSRT*

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