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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08100 | AT | Annotation by Michelle Graham. TAIR10: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr5:2593242-2594586 REVERSE LENGTH=315 | SoyBase | E_val: 5.00E-178 | ISS |
| GO:0006516 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycoprotein catabolic process | SoyBase | N/A | ISS |
| GO:0033345 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asparagine catabolic process via L-aspartate | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004067 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: asparaginase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1592 | KOG | Asparaginase | JGI | ISS | |
| PTHR10188 | Panther | PROTEASE T2 ASPARAGINASE | JGI | ISS | |
| PF01112 | PFAM | Asparaginase | JGI | ISS | |
| UniRef100_C6TER3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TER3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P50288 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isoaspartyl peptidase/L-asparaginase n=2 Tax=Lupinus RepID=ASPG_LUPAL | SoyBase | E_val: 0 | ISS |
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Glyma05g07420 not represented in the dataset |
Glyma05g07420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g018300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g07420.3 sequence type=transcript gene model=Glyma05g07420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGTTTATTTTTAGTTCTTTTTAATAAAATCTTTGACTTGGTCAAGTTTTGAGAGAAAATTATTACTCTATTATGGGGGGTGAGGGGTACTTAATTTTTCTTGTAGCAGTAGACAAACTGTTAGCAACAGAATATTAGGAACTAGATTTTGAGGTTTAGCACCTCCAGAGAAAAAGGAAGGAGCAGAACACGACAGAGTGAGGGAAGCTTTGTAAAATTCTTATTGCCTTTTGCTTGTTATTACAAGGTTCTTATAGAATTCCTAGTACAGAATGATTCTAGGAATATTACAATAACCAATTCTGATAAAAAGTTGCTCCGCAGGACCAACAATTTCAAGCAAGGCGATTTGGAGAAGATTTGGCAGAAGCTTCTGTTTTGACAGTTTCCTCAGACGAAATCCAGACGAAATCGTGAAGGGGAACCTGACAGAGGCAGTTAACGAACAAACAGATGGGTTGGGCCATAGCACTACACGGCGGCGCCGGCGACATCCCGCTTTCCCTTCCACCGGAGCGCCGCCAGCCTCGCGAGGAGGCCCTCCGCCACTGCCTCCAAATCGGCGTGGAAGCTCTCAAGGCCAAACTGCCTCCTCTCGACGTGGTTGAACTTGTCGTTCGGGAGTTGGAGAACATTCCGCAGTTTAACGCGGGAAGGGGATCTGTGCTGACTTGCAGAGGCACCGTGGAAATGGAAGCTTCCATAATGGACGGCACCACTATGAATTGCGGAGCTGTTTCCGGCCTCACTACCGTCGTCAACGCCATCTCTCTTGCTCGATTGGTCATGGAAAACACGCCTCACATCTATCTCGCTTTCGATGGAGCAGAGGAATTTGCAAGACAACAAGGCGTTGAGACTGTGGATTCAAGCCATTTTATTACAAAAGAAAATATTGAAAGGCTAAAGCAGGCAAAAGAAGCTAACAGGGTTCAGATTGATTATACGCAACCTATCCAAAATGATACTAAGAAAGAGACCGCATTGGCTAATGGTGATAGCCAAATTGGAACTGTTGGGTGTGTGGCTGTAGATAGTCTTGGGAATTTGGCTTCTGCAACATCTACTGGTGGATTAGTGAACAAAATGGTGGGTCGAATTGGTGACACACCAGTCATTGGTGCTGGTACCTATGCGGATGCACGTTGTGCGGTTTCAGCGACAGGCAAAGGTGAAGCAATAATACGTGGGACAGTGGCAAGAGATGTGGCTGCTCTGATGGAGTTTAAGGGTCTTTCTCTCGTGGAAGCTGCTAATTGTGTTGTACATGAGCGCACACCAAAAGGCACTGTTGGTTTGGTTGCTGTGTCTGCCAAAGGAGAAGTTGCAATGCCTTTTAATACAACAGGCATGTTCAGAGCGTGTGCTACTGAAGATGGATATTCTGAGATTGCAATTTGGCCTGCTGCCAAAATAGAGTAGTCTTTAGGCTTTACTGATTTCCAAGCTTAATGTATTCTGACATTTGATGATGCTTCACGCATGCTTATATCACAGGGAAATCTATCTGCTTTTCAAGGTATAAATAGTCGTTTGGTTCCTGATCATAGTCTTCCCAAGCGCCTCTTTATCCGTTACACTCTGCTTTTTATATAGTTTGTGCTACATTGTGAATATGATAACCTTCTATCATTACCAAGGTGTTTATAACCATCATCTTCCTTTACATTTTTTTAGTCCTCTGTAGTATCTATCAGTGATATGTGCTTCCTTTTGTTTTCCTTTATTTTATTTTTATTATTTGTGTGTTGGGAGAAGGGGGATGACAGCATTCATTCTTTATAACTACAGAATTCATTGCGTGTCAAGTGTCACTATTATATTGTCCATTCTGTGATGAAATTAATCTACATTTGAAGTTTAG
>Glyma05g07420.2 sequence type=CDS gene model=Glyma05g07420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGGCCATAGCACTACACGGCGGCGCCGGCGACATCCCGCTTTCCCTTCCACCGGAGCGCCGCCAGCCTCGCGAGGAGGCCCTCCGCCACTGCCTCCAAATCGGCGTGGAAGCTCTCAAGGCCAAACTGCCTCCTCTCGACGTGGTTGAACTTGTCGTTCGGGAGTTGGAGAACATTCCGCAGTTTAACGCGGGAAGGGGATCTGTGCTGACTTGCAGAGGCACCGTGGAAATGGAAGCTTCCATAATGGACGGCACCACTATGAATTGCGGAGCTGTTTCCGGCCTCACTACCGTCGTCAACGCCATCTCTCTTGCTCGATTGGTCATGGAAAACACGCCTCACATCTATCTCGCTTTCGATGGAGCAGAGGAATTTGCAAGACAACAAGGCGTTGAGACTGTGGATTCAAGCCATTTTATTACAAAAGAAAATATTGAAAGGCTAAAGCAGGCAAAAGAAGCTAACAGGGTTCAGATTGATTATACGCAACCTATCCAAAATGATACTAAGAAAGAGACCGCATTGGCTAATGGTGATAGCCAAATTGGAACTGTTGGGTGTGTGGCTGTAGATAGTCTTGGGAATTTGGCTTCTGCAACATCTACTGGTGGATTAGTGAACAAAATGGTGGGTCGAATTGGTGACACACCAGTCATTGGTGCTGGTACCTATGCGGATGCACGTTGTGCGGTTTCAGCGACAGGCAAAGGTGAAGCAATAATACGTGGGACAGTGGCAAGAGATGTGGCTGCTCTGATGGAGTTTAAGGGTCTTTCTCTCGTGGAAGCTGCTAATTGTGTTGTACATGAGCGCACACCAAAAGGCACTGTTGGTTTGGTTGCTGTGTCTGCCAAAGGAGAAGTTGCAATGCCTTTTAATACAACAGGCATGTTCAGAGCGTGTGCTACTGAAGATGGATATTCTGAGATTGCAATTTGGCCTGCTGCCAAAATAGAGTAG >Glyma05g07420.3 sequence type=CDS gene model=Glyma05g07420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGGCCATAGCACTACACGGCGGCGCCGGCGACATCCCGCTTTCCCTTCCACCGGAGCGCCGCCAGCCTCGCGAGGAGGCCCTCCGCCACTGCCTCCAAATCGGCGTGGAAGCTCTCAAGGCCAAACTGCCTCCTCTCGACGTGGTTGAACTTGTCGTTCGGGAGTTGGAGAACATTCCGCAGTTTAACGCGGGAAGGGGATCTGTGCTGACTTGCAGAGGCACCGTGGAAATGGAAGCTTCCATAATGGACGGCACCACTATGAATTGCGGAGCTGTTTCCGGCCTCACTACCGTCGTCAACGCCATCTCTCTTGCTCGATTGGTCATGGAAAACACGCCTCACATCTATCTCGCTTTCGATGGAGCAGAGGAATTTGCAAGACAACAAGGCGTTGAGACTGTGGATTCAAGCCATTTTATTACAAAAGAAAATATTGAAAGGCTAAAGCAGGCAAAAGAAGCTAACAGGGTTCAGATTGATTATACGCAACCTATCCAAAATGATACTAAGAAAGAGACCGCATTGGCTAATGGTGATAGCCAAATTGGAACTGTTGGGTGTGTGGCTGTAGATAGTCTTGGGAATTTGGCTTCTGCAACATCTACTGGTGGATTAGTGAACAAAATGGTGGGTCGAATTGGTGACACACCAGTCATTGGTGCTGGTACCTATGCGGATGCACGTTGTGCGGTTTCAGCGACAGGCAAAGGTGAAGCAATAATACGTGGGACAGTGGCAAGAGATGTGGCTGCTCTGATGGAGTTTAAGGGTCTTTCTCTCGTGGAAGCTGCTAATTGTGTTGTACATGAGCGCACACCAAAAGGCACTGTTGGTTTGGTTGCTGTGTCTGCCAAAGGAGAAGTTGCAATGCCTTTTAATACAACAGGCATGTTCAGAGCGTGTGCTACTGAAGATGGATATTCTGAGATTGCAATTTGGCCTGCTGCCAAAATAGAGTAG
>Glyma05g07420.2 sequence type=predicted peptide gene model=Glyma05g07420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWAIALHGGAGDIPLSLPPERRQPREEALRHCLQIGVEALKAKLPPLDVVELVVRELENIPQFNAGRGSVLTCRGTVEMEASIMDGTTMNCGAVSGLTTVVNAISLARLVMENTPHIYLAFDGAEEFARQQGVETVDSSHFITKENIERLKQAKEANRVQIDYTQPIQNDTKKETALANGDSQIGTVGCVAVDSLGNLASATSTGGLVNKMVGRIGDTPVIGAGTYADARCAVSATGKGEAIIRGTVARDVAALMEFKGLSLVEAANCVVHERTPKGTVGLVAVSAKGEVAMPFNTTGMFRACATEDGYSEIAIWPAAKIE* >Glyma05g07420.3 sequence type=predicted peptide gene model=Glyma05g07420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWAIALHGGAGDIPLSLPPERRQPREEALRHCLQIGVEALKAKLPPLDVVELVVRELENIPQFNAGRGSVLTCRGTVEMEASIMDGTTMNCGAVSGLTTVVNAISLARLVMENTPHIYLAFDGAEEFARQQGVETVDSSHFITKENIERLKQAKEANRVQIDYTQPIQNDTKKETALANGDSQIGTVGCVAVDSLGNLASATSTGGLVNKMVGRIGDTPVIGAGTYADARCAVSATGKGEAIIRGTVARDVAALMEFKGLSLVEAANCVVHERTPKGTVGLVAVSAKGEVAMPFNTTGMFRACATEDGYSEIAIWPAAKIE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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