SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19260 | AT | Annotation by Michelle Graham. TAIR10: TTF-type zinc finger protein with HAT dimerisation domain | chr1:6657260-6659569 REVERSE LENGTH=769 | SoyBase | E_val: 1.00E-28 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| PTHR11697 | Panther | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN | JGI | ISS | |
| PTHR11697:SF9 | Panther | TRANSPOSASE-LIKE PROTEIN | JGI | ISS | |
| PF05699 | PFAM | hAT family dimerisation domain | JGI | ISS | |
| UniRef100_B9NEN7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NEN7_POPTR | SoyBase | E_val: 2.00E-82 | ISS |
| UniRef100_G7IY07 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger MYM-type protein n=1 Tax=Medicago truncatula RepID=G7IY07_MEDTR | SoyBase | E_val: 1.00E-80 | ISS |
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Glyma05g07083 not represented in the dataset |
Glyma05g07083 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g074700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g07083.1 sequence type=CDS gene model=Glyma05g07083 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAAAATGTACAATGCATCTTGTGTGGTTCTCCAAAGAATTATAGTTGATGGATCAACTTATTCTCAAAAGGGAGTTATTGATGTTGCTTATAATTTTTTGTCTTCATTTGAGTTCATATTGATTTTACACATGATGAAAGAGATTGTAGGGATTACTGATTGTCTTTGTCAAGCTTTGCAACAACAATCTCAAGATACACTTAATGTTATGCAGCATGTCCATTCTACTAAAGTGTTAATTCAAAAGTTAAAAGATGATGGTTGGCAAGCTTTGCTGAAAGATGTGGTATTGTTTTGTGAGCAACATGACATTTATATTCCTGATTTCAATGGTACCTATGTAGCACATCATGGGCGCTCTCGATATCAAAAAGATCATATCACAATAGAACATCATTTCAGAGTGAACACAATTTTTATTGCAGTTGATAAGCAATTGCAGGAGTTAAATGCTAGGTTTAGTGAGCAAACAATGGAAGTTTTAACTTTAATCTGTGTTTTAGTTCCTAAGATATTTTTATACAACTTTCAATTTATCCACCATGCTTTGTGTCAATCATTGGGAAGAATAGGGCACTCAAATACATTTTATTCGATTGATCAATTAGTTCATCTTATCTTAACTCTTCCAATTTCTATAGCTACAACAAAAAGATCTTTTTCAACAATGAAAATCATCAAAAGTAGATTGTGTGAAAGGATGAAAGATGAATTTCTTGTACATAATATGGTTATTTATATTGAAAAAGAAATAGCTGAAAACTTTAGTTATGATTAA
>Glyma05g07083.1 sequence type=predicted peptide gene model=Glyma05g07083 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMKMYNASCVVLQRIIVDGSTYSQKGVIDVAYNFLSSFEFILILHMMKEIVGITDCLCQALQQQSQDTLNVMQHVHSTKVLIQKLKDDGWQALLKDVVLFCEQHDIYIPDFNGTYVAHHGRSRYQKDHITIEHHFRVNTIFIAVDKQLQELNARFSEQTMEVLTLICVLVPKIFLYNFQFIHHALCQSLGRIGHSNTFYSIDQLVHLILTLPISIATTKRSFSTMKIIKSRLCERMKDEFLVHNMVIYIEKEIAENFSYD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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