SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G13770 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343 | SoyBase | E_val: 2.00E-42 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0016788 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds | SoyBase | N/A | ISS |
| PF04827 | PFAM | Plant transposon protein | JGI | ISS | |
| UniRef100_G7JHT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7JHT1_MEDTR | SoyBase | E_val: 6.00E-44 | ISS |
| UniRef100_Q67V33 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q67V33_ORYSJ | SoyBase | E_val: 5.00E-40 | ISS |
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Glyma05g06680 not represented in the dataset |
Glyma05g06680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g06680.1 sequence type=CDS gene model=Glyma05g06680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAACAACAAGCAAAGAGTAGCAATCGACCCAAACAAACAAGAAGAAACATAAATCGCAATCGTGAAGACGAACATAGTCACTTGATGAATGACTACTTCTCTGAAAATTGCAAGTGCATTATAGCAATTCATATATTGGCATACGAATCACCTATCAATAGTATGGATGAGTATGTTAGAATCGGTAATAGCACTGTAGTTGAACGCTTAAAAGCTTTTGTAAAGGGTATGAACAAGATATTTGGAGATGAGTATCTGAGAAGGCCTAACAACTACGACATCAATCGCCTACTACAAATTGGAGAGACACCTGACTTTCCAAGTCGAGCTCCTCCAGTGCAATTTACAATTAATGGAACCACACAAAATATGGGATACTATCTTGTAGATGACATTTATCCTAATTGGGGCATATTAGTGAAGACCATCCCAATGCCACATGGAGAGAAAAAAAAGTTATTTGCAAAATGTCAAGCGACAAGAAAGGATGTGAAGAGAGCAGTTGAAATGGGTATCATGAAGAACATAATCTTGACATGCATTATATTCTATAACATGATTGTTGAAAACAAACAAAATATGTGTAGTGGTAATGTTGATGTTGATTATGATCATATTGAAAATGAGATTTCAAACATTGATATATCTTGGGATGATCATCCCGACTTTGCTGCATACCTGCAAACAAGATGTTATATGCATACAAGAGGAGTTCATCAACAATTTCAAACAGACTTAGTAAAAAATATTTGA
>Glyma05g06680.1 sequence type=predicted peptide gene model=Glyma05g06680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQQQAKSSNRPKQTRRNINRNREDEHSHLMNDYFSENCKCIIAIHILAYESPINSMDEYVRIGNSTVVERLKAFVKGMNKIFGDEYLRRPNNYDINRLLQIGETPDFPSRAPPVQFTINGTTQNMGYYLVDDIYPNWGILVKTIPMPHGEKKKLFAKCQATRKDVKRAVEMGIMKNIILTCIIFYNMIVENKQNMCSGNVDVDYDHIENEISNIDISWDDHPDFAAYLQTRCYMHTRGVHQQFQTDLVKNI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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