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Report for Sequence Feature Glyma05g06535

Feature Type:gene_model
Chromosome:Gm05
Start:6585368
stop:6586355
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g06535
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G13770AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343 SoyBaseE_val: 9.00E-17ISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PF04827PFAM Plant transposon protein JGI ISS
UniRef100_G7JIJ1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein-like protein n=1 Tax=Medicago truncatula RepID=G7JIJ1_MEDTR SoyBaseE_val: 2.00E-20ISS
UniRef100_G7LA49UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7LA49_MEDTR SoyBaseE_val: 1.00E-20ISS

Expression Patterns of Glyma05g06535
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g06535 not represented in the dataset
Glyma05g06535 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g06535 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma05g06535
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g06535
>Glyma05g06535.1   sequence type=CDS   gene model=Glyma05g06535   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAAGTCGTTATTCCTTCAAACTGTAGACGCTGTCAGTAATCATGATCTGTATTTCCAAATGAGATTTGTTGCAATTGCAATTCGTATATTGACATACGGATCACTTGTCGGTACTGTCAATGAGTATGTTAGAATTATCAAATGCACTGCAATTGAATACTTAGAAGATTTTGTAAAGGGTGTGAATGAGATATTTAGGGATGAGTACTTGAGAAGCCCAAACAACAATGACATCAATCGCCTGCTACAAATTGGAGAGGCACACGGGTTTCAAGATATGTTGGAGAATATTATATTGCATAACATGATTGTTGAAGACAAACGAGATACATATAATGGTAATGTTGATATTGATTATGATCATACAGACGAAGAGATTTCAAACATTGACATATTTCGTGGTGTTCCTCTTGACTTTGTTACATACCTACAAACAAGACATTATATGCGTACAAGAGGAGTTAATCAACAACTTTAA
Predicted protein sequences of Glyma05g06535
>Glyma05g06535.1   sequence type=predicted peptide   gene model=Glyma05g06535   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKSLFLQTVDAVSNHDLYFQMRFVAIAIRILTYGSLVGTVNEYVRIIKCTAIEYLEDFVKGVNEIFRDEYLRSPNNNDINRLLQIGEAHGFQDMLENIILHNMIVEDKRDTYNGNVDIDYDHTDEEISNIDIFRGVPLDFVTYLQTRHYMRTRGVNQQL*






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