Report for Sequence Feature Glyma05g06480
Feature Type: gene_model
Chromosome: Gm05
Start: 6497584
stop: 6509561
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g06480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G40740 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005819 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: spindle
SoyBase N/A ISS
GO:0009524 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0051011 GO-mf
Annotation by Michelle Graham. GO Molecular Function: microtubule minus-end binding
SoyBase N/A ISS
UniRef100_G7KJU2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7KJU2_MEDTR
SoyBase E_val: 8.00E-10 ISS
UniRef100_I1K138 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K138_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma05g06480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g06480
Paralog Evidence Comments
Glyma19g22710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g06480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g073400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g06480
Coding sequences of Glyma05g06480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g06480.1 sequence type=CDS gene model=Glyma05g06480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGATGGACAGAGAGAAGGAGAGAGAGATAGAGCTGGAGAGTGCAATGTACACGAATTGCTTGTTGTTGGGTCTGGATCCGGCGATCATCGGAGTCGGAGCCTCCAACGCGACTCCTCGGGTCGGGCATTTCCGTCACTCGAACCCTAAATTGGGGGAACAGCTTCTCTACTTCATCCTTTCCTCTCTCAGAGGCCCAATTCAATCCGCAAAAGATTTCGATAAGGTCTGGCCGATTTTCGATTCCGCGCAGTCGCGTGATTTTCGTAAGGTTGTTCAGGGGATTATTAGCGAGCTTGAGTCGCAGGGCGCACTTCCGAGGAGCAATTCGAGGGTTTCTTCACTTGCTACGTGCTGTGGACCTAGGTTTGTTGAGCTTCTATGGCAACTTTCTTTGCATGCTTTACGAGAGGTTCATCGACGGACATTTACTGCTGACATATCTTCTAACCCATTGCCTGCGCCATTGACTGATGTAGCCTTCTCACATGCGGCTACTCTACTTCCAGTTACAAAGGCAAGAATAGCGCTTGAAAGAAGAAAGTTTCTTAAAAATGCAGAAATGGCTGTACAGCGGCAGGCTATGTGGTCTAATTTGGCTCATGAAATGACTGCTGAATTTCGTGGTTTATGTGCTGAAGAGGCTTATTTGCAACAAGAATTGGAAAAACTGCATGACTTGAGGAATAAAGTGAAGTTGGAAGGAGAGCTCTGGGATGATCTTGTATCTAGTTCAAGTCAAAATTCCCATTTAGTTTCAAAGGCTACTCGGCTATGGGAGTCTTTATTAGCTCGTAAAAGTCAACATGAAGTTCTTGCATCTGGTCCTATTGAGGACTTGATAGCTCATCGAGAACATAGGTATCGAATCTCTGGATCATCTTTGCTTGCAGCAATGGACCAGAGTTCACAAGCTCCTTATTCAGATGTATTATCTGCTCAGTCTGGGGATTTGCCTGCAATGGATAACAAAGAAGAGAATGATGGATCACATTTCAGCAATGAGACATTGACAAGATTGGATGACAGAACTGGAAGAGCCCACCAAACTGTTGATGTAGCTGAGGTTATACGGCGATGGACCCATGCCTTGCAACGTATCCACAAACAATCACTTCATTTGGCAAAAGCGAATGATGGAGAGGGTCCAGATATATTACGCAGTGCACAGGAAGGTGATTCAAGTGGCCATGCTGAGTCTTTAGCAGCAACCCTTGCAGAGCATCAGCAGCATTTGGCTAGCTTCCAGGTGCTTATTAACCAACTCAAGGATGTTGCTCCAACCATACAGAAGTCCATATCTGAGTGTACAGAAAAGGTTAACTGTATAACCTCCAATTTACCTCCAACGAACAGACCTAATGGTCGGTCAACGTCACCTATCCAGACACAGAGTAGTGGGAGGATGGACAATAGCAATGATGATGTTAGCGATGTGACTTCTAGAATATCTAATATTCAGCTTGACAAGGTTTCTGTTAGTCCTCCCACTTTAAAGCTTCCTCAATTATTTAGCTTGACTCCATCTTCTGGAAAATCTGGAAATGTCCAAAGGCGGCACAATAATGCTCCTCAAACCAGCCAAACAGAGAACCTCTCTGATAGAAAATCACTGGATCCTCCTTCAAATAACGAAGTAGAAAGTTCAGCTGAAGATAGTGATAGTTGCTATGTCCACAATTTGAAGAGGTCGGTAAGAGAAGCAGCACTGTCATTGCGGTCATGTAATTCAGAATCGTCACGGGATAGTCAATCTGATGGAAGTTCTGAGCACTTCTTTGTCCCTCTTTCAGAAACTGGCTTTTCTAATTTAGATGCAGACAAAAGGGGAGCTTCATTAAGGAGCAAAAGATTATTTGTATCCCAAATGGATGATTCTTTGCTTGAGAGTCATGCATCTGGTGGGCATGGGGAGAGCAAGTTTGATGAATTTCCAGATATGTTGAATGATTTGGAAAGGCTTTCTGTCTCTGATTACAACAATGTTAATGGTTTTCTATCATATACTGGTTCAAATTCAACATCTGATGCTCAGCGGTCATTTTTTGACTTTGAGGATTCCCAGGATCAAGTCTTCTCACCACCTTTGCTAATGGACTCATCACTTTTGACAGATCCATTTGAAGACTTGCTGGCCCCTCTCTCCGAGACTGAAACGGCCTTGATAGACCATTGA
Predicted protein sequences of Glyma05g06480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g06480.1 sequence type=predicted peptide gene model=Glyma05g06480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTMDREKEREIELESAMYTNCLLLGLDPAIIGVGASNATPRVGHFRHSNPKLGEQLLYFILSSLRGPIQSAKDFDKVWPIFDSAQSRDFRKVVQGIISELESQGALPRSNSRVSSLATCCGPRFVELLWQLSLHALREVHRRTFTADISSNPLPAPLTDVAFSHAATLLPVTKARIALERRKFLKNAEMAVQRQAMWSNLAHEMTAEFRGLCAEEAYLQQELEKLHDLRNKVKLEGELWDDLVSSSSQNSHLVSKATRLWESLLARKSQHEVLASGPIEDLIAHREHRYRISGSSLLAAMDQSSQAPYSDVLSAQSGDLPAMDNKEENDGSHFSNETLTRLDDRTGRAHQTVDVAEVIRRWTHALQRIHKQSLHLAKANDGEGPDILRSAQEGDSSGHAESLAATLAEHQQHLASFQVLINQLKDVAPTIQKSISECTEKVNCITSNLPPTNRPNGRSTSPIQTQSSGRMDNSNDDVSDVTSRISNIQLDKVSVSPPTLKLPQLFSLTPSSGKSGNVQRRHNNAPQTSQTENLSDRKSLDPPSNNEVESSAEDSDSCYVHNLKRSVREAALSLRSCNSESSRDSQSDGSSEHFFVPLSETGFSNLDADKRGASLRSKRLFVSQMDDSLLESHASGGHGESKFDEFPDMLNDLERLSVSDYNNVNGFLSYTGSNSTSDAQRSFFDFEDSQDQVFSPPLLMDSSLLTDPFEDLLAPLSETETALIDH*