Glyma05g06430 - SoyBase

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Report for Sequence Feature Glyma05g06430

Feature Type:	gene_model
Chromosome:	Gm05
Start:	6411173
stop:	6416161
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g06430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G27320	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:10090307-10092391 FORWARD LENGTH=428	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_I1K136	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K136_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0ZPU8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CXE carboxylesterase n=1 Tax=Actinidia deliciosa RepID=Q0ZPU8_ACTDE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g06430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g06430

Paralog	Evidence	Comments
Glyma19g22760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g06430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g073200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g06430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g06430

Limit To All Plant Sequences

>Glyma05g06430.1   sequence type=CDS   gene model=Glyma05g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGAGCGTGGCCGTGAAACTCTACAGCGTGTTTTTCAAGTTTCTCTTAAAGCACCGTTTGCAGAACCGGATCCAAGCACCGCCCGAAGACTCCGACTCTTTCGGCGTCACGACCCGACCCGACGAATCGGTGGCTCCGGCCAACCCTTCATTCTCCGACGGCGTTGCCACCAAAGACATTCACATCGACCCCTTAACCTCTCTCTCCATTCGAATTTTCCTTCCCGATTCCGCGCTCGAGCCTAATTCCAAACCTAGCTCCAAACCCGAACCCGGATCGGCGAACCCCAAAACGGCGTCGTTAAGCAGGCTGAGGCGCAACAGCTACGAGCCGGCGATTTTCTTGCCGCGGGAGGAGGAGCGGCGGAACAGCGTCGGCGATGTCGGCGCGTACCGGGGGTACGCGCCGGCGCCTTCGGGGGAAGGTCGCCGGAAAAAGTTGCCGGTGGTTCTACAGTTCCATGGTGGGGGGTGGGTGACCGGGAGCAACGATTCGGTGGCGAACGACGTGTTCTGCCGGCGGATCGCGAGGCTCTGTGAGGCGGTGGTGGTGGCGGTGGGGTACCGGCTGGCGCCAGAGAATCGGTACCCGGCGGCGTTCGAGGACGGGATGAAGGTGCTGAATTGGCTGGCGAAGCAGGCGAATTTGGCGGAGTGTAGTAAGTTGATGGGGGGTAGGAGGTTGGAGGGCCAGCACAAGCATATTGTGGGTTCCTTTGGGGCATCAATGGTTGAGCCTTGGTTGGCTGCTCATGGAAATCCTGCAAGGTGTGTTCTTCTTGGCGTGAGTTGCGGTGCAAATATTGCAGACCATGTGGCTCGAAAAGCTGTAGAAGCAGGCAAACTTCTGGACCCTGTCAAGGTGGTGGCACAGGTCCTGATGTATCCATTTTTTATTGGAAGTGTGCCCACTCGTTCTGAAATAAAGTTGGCAAATTCTTACTTTTACGACAAGGCCATGTGTATGCTAGCATGGAAACTATTCCTACCTGAGAAAGAGTTTAGCCTAGATCATCCAGCCGCCAATCCTCTAGCCCCAGATCACAGTCCTCCTTTAAAGAAGATGCCTCCAACATTGACAGTGGTGGCAGACCATGACTGGATGAGGGACCGCGCCATTGCCTATTCAGAGGAGCTAAGGAAGGTGAATGTTGATGCACCTGTTTATGAGTATAAAGATGCAGTCCATGAATTTGCAACACTTGACGTACTTCTCAAAAGCCCCCAGGCCCAGATATTGGAAGCACTTTGA

Predicted protein sequences of Glyma05g06430

Limit To All Plant Sequences

>Glyma05g06430.1   sequence type=predicted peptide   gene model=Glyma05g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSVAVKLYSVFFKFLLKHRLQNRIQAPPEDSDSFGVTTRPDESVAPANPSFSDGVATKDIHIDPLTSLSIRIFLPDSALEPNSKPSSKPEPGSANPKTASLSRLRRNSYEPAIFLPREEERRNSVGDVGAYRGYAPAPSGEGRRKKLPVVLQFHGGGWVTGSNDSVANDVFCRRIARLCEAVVVAVGYRLAPENRYPAAFEDGMKVLNWLAKQANLAECSKLMGGRRLEGQHKHIVGSFGASMVEPWLAAHGNPARCVLLGVSCGANIADHVARKAVEAGKLLDPVKVVAQVLMYPFFIGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEKEFSLDHPAANPLAPDHSPPLKKMPPTLTVVADHDWMRDRAIAYSEELRKVNVDAPVYEYKDAVHEFATLDVLLKSPQAQILEAL*

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