Glyma05g06390 - SoyBase

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Report for Sequence Feature Glyma05g06390

Feature Type:	gene_model
Chromosome:	Gm05
Start:	6328794
stop:	6339980
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g06390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01720	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). \| chr3:262412-265608 REVERSE LENGTH=802	SoyBase	E_val: 0	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
UniRef100_H3JU07	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl serine alpha-galactosyltransferase n=1 Tax=Nicotiana tabacum RepID=H3JU07_TOBAC	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A426	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A426 related cluster n=1 Tax=unknown RepID=UPI000233A426	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g06390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g06390

Paralog	Evidence	Comments
Glyma19g07790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g06390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g072300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g06390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g06390

Limit To All Plant Sequences

>Glyma05g06390.1   sequence type=CDS   gene model=Glyma05g06390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGTTTGGATTTTGATGGTGTTTGTGTTGGTGGGTGTGGTTGGCATTGTTGAAGGGGCAAGGAAGCACCCATCATCAGGGAGGAGGATCCACACTCTGTTCTCTGTGGAATGTCAGAACTACTTCGACTGGCAAACAGTGGGGCTGATGAACAGTTACAGGAAGGCCAAGCATCCTGGACCAATCACAAGGCTCCTCAGTTGCACTGATGAGGAGAAGAATAAGTACAAAGGGATGCATTTGGCACCAACCTTTGAGGTGCCCTCAATGAGTAGACACCCCAAAACTGGTGACTGGTACCCTGCAATAAACAAACCTGCTGGGGTTGTACACTGGCTTAAACATAGTAAGGAGGCAAAAAATGTTGACTGGGTTGTCATTCTGGATGCAGACATGATAATTCGAGGGCCCATTATCCCTTGGGAACTTGGTGCAGAGAAAGGAAGGCCTGTTGCAGCATATTATGGGTACTTAATAGGTTGTGACAATATTTTGGCTAAACTGCACACAAAACACCCAGAACTGTGTGACAAAGTTGGTGGGCTTTTGGCCTTTCATATAGATGACCTGCGAGTTTTTGCCCCCTTGTGGCTTTCAAAAACAGAAGAAGTACGGGAAGATACGGTTCACTGGGCGACAAACATAACTGGTGACATCTATGGGAAAGGATGGATCAGTGAGATGTACGGATACTCTTTTGGTGCTGCAGAAGTTGGACTTCGGCACAAAATCAATGATAACTTAATGATCTACCCAGGTTATGTTCCTCGCGAGGGAATTGAGCCAATTCTTCTTCACTATGGGTTGCCATTTAGTGTTGGGAATTGGTCATTCAATAAACTGGCTCACCATGATGACGGAATTGTATATGAATGTAACCAGCTCTTTCCAGAACCTCCTTACCCAAAAGAGGTAAGACAGTTGGAACTTGATCCTAATCGAAGGCGAGGACTATTTCTAAGTTTAGAGTGCATAAACATTATAAATGAGGGTCTTTTATTACAACATGCAGCAAATGGTTGCCCTAAACCAACATGGTCTAAATACTTGAGCTTTTTGAAAAGCAAAGCTTATGCAGAACTAACTCAGCCAAAATATGTGAATCCTGCTACTTTACAAATGATGGAGGATATCAAAGAAGAACATGTCGATGATGGTGCTGGAAAGCCACATCCCAAAATCCATACCATTTTTTCCACGGAATGCACCCCGTACTTTGATTGGCAGACTGTAGGACTTATGCACAGTTTCCGTAGAAGTGGACAGCCTGGAAATATCACTAGACTTCTCAGCTGCTCTGATGAGGACTTACGTCAGTATAAAGGCCATGATCTGGCTCCCACACATTATGTCCCTTCTATGAGTCGACATCCATTAACAGGAGATTGGTACCCAGCAATTAATAAACCTGCTGCAGTCCTTCACTGGCTTAATCATGTAAATATTGATGCTGAATTCATAGTGATTCTTGATGCTGATATGATCTTGAGAGGCCCAATAACACCATGGGAGTTCAAAGCTGCTCGTAGTCATCCTGTTTCGACTCCCTATGACTACCTTATCGGCTGTGATAATGAGCTTGCAAAATTGCATACTAGCCATCCCGAGGCTTGTGACAAGGTTGGTGGTGTTATCATTATGCATATTGATGATCTCCGGAAATTCGCTATGCTATGGCTGCATAAAACTGAGGAGGTCCGAGCTGATAGAGCTCATTATGCAAGAAATATAACAGGAGACATATATGAATCTGGGTGGATTAGTGAGATGTATGGTTACTCATTTGGTGCAGCTGAGTTGAAATTAAGGCATACCATAAACAATGAGATACTGATATACCCGGGTTATGTTCCTGTACCGAGTGTCAACTATAGAGTCTTTCATTACGGATTGCGATTCAGTGTTGGCAATTGGAGCTTTGACAAAGCAGACTGGCGCAACGTTGACATGGTCAACAAATGCTGGGCCAAGTTCCCAGACCCACCAGATTCCTCACCAATTGATCTGGCCAACAATGAGGATTTACAGCGAGACCTGCTCAGCATTGAATGTGCTAAGACGTTGAATGAAGCACTAAATCTGCACCATCAGAAAAGGTGTTCTAGTAATAATTCCTTGTCAACATCAAAAGAGGACAAAAAAGAGGAAAATGGAGTCTCAAGAGTCAACAGCATAGATGCAAATGATGATTCAGTAAGCAATAATATCTCAACAAATCAATCGGAGGAATCAGCGAATGCTCGGAAAGACGAGATGCCTAGTTCTTTCAGGTTTTGGGTGATATTCTTGTGGGCATTTTCTGGAGTAGGTTTCTTGGTTGTTATTTTTGTGGTGTATTCAGGTCATAGAAGAAGAGGAACAAGGTTAAAACACGGTAGAAGGAGAAGAAGCTTGCATACAGGATTCATGGAAACGAATAGCCGTGACCGGCATAGCCGTGGTGTCGATGTTCCTCTGTAG

Predicted protein sequences of Glyma05g06390

Limit To All Plant Sequences

>Glyma05g06390.1   sequence type=predicted peptide   gene model=Glyma05g06390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKVWILMVFVLVGVVGIVEGARKHPSSGRRIHTLFSVECQNYFDWQTVGLMNSYRKAKHPGPITRLLSCTDEEKNKYKGMHLAPTFEVPSMSRHPKTGDWYPAINKPAGVVHWLKHSKEAKNVDWVVILDADMIIRGPIIPWELGAEKGRPVAAYYGYLIGCDNILAKLHTKHPELCDKVGGLLAFHIDDLRVFAPLWLSKTEEVREDTVHWATNITGDIYGKGWISEMYGYSFGAAEVGLRHKINDNLMIYPGYVPREGIEPILLHYGLPFSVGNWSFNKLAHHDDGIVYECNQLFPEPPYPKEVRQLELDPNRRRGLFLSLECINIINEGLLLQHAANGCPKPTWSKYLSFLKSKAYAELTQPKYVNPATLQMMEDIKEEHVDDGAGKPHPKIHTIFSTECTPYFDWQTVGLMHSFRRSGQPGNITRLLSCSDEDLRQYKGHDLAPTHYVPSMSRHPLTGDWYPAINKPAAVLHWLNHVNIDAEFIVILDADMILRGPITPWEFKAARSHPVSTPYDYLIGCDNELAKLHTSHPEACDKVGGVIIMHIDDLRKFAMLWLHKTEEVRADRAHYARNITGDIYESGWISEMYGYSFGAAELKLRHTINNEILIYPGYVPVPSVNYRVFHYGLRFSVGNWSFDKADWRNVDMVNKCWAKFPDPPDSSPIDLANNEDLQRDLLSIECAKTLNEALNLHHQKRCSSNNSLSTSKEDKKEENGVSRVNSIDANDDSVSNNISTNQSEESANARKDEMPSSFRFWVIFLWAFSGVGFLVVIFVVYSGHRRRGTRLKHGRRRRSLHTGFMETNSRDRHSRGVDVPL*

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