|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G10330 | AT | Annotation by Michelle Graham. TAIR10: Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312 | SoyBase | E_val: 6.00E-59 | ISS |
GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
GO:0006352 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation | SoyBase | N/A | ISS |
GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
KOG1597 | KOG | Transcription initiation factor TFIIB | JGI | ISS | |
PTHR11618 | Panther | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | JGI | ISS | |
PTHR11618:SF13 | Panther | BRF GENE PRODUCT | JGI | ISS | |
PF00382 | PFAM | Transcription factor TFIIB repeat | JGI | ISS | |
PF08271 | PFAM | TFIIB zinc-binding | JGI | ISS | |
UniRef100_B9T8A1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor iib, putative n=1 Tax=Ricinus communis RepID=B9T8A1_RICCO | SoyBase | E_val: 7.00E-58 | ISS |
UniRef100_UPI000233A421 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A421 related cluster n=1 Tax=unknown RepID=UPI000233A421 | SoyBase | E_val: 0 | ISS |
Glyma05g06330 not represented in the dataset |
Glyma05g06330 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.05g072000 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g06330.2 sequence type=CDS gene model=Glyma05g06330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGCTGATGAAGAGTATTGCAGTGACTGCAAAAGCTACACTCCATTAGTGTATGATCACAAGGCTGGGGACTCAATCTGCTCAGAATGTGGCTTGGTTCTCGAGTCCCGTTCCATAGAAGAAGAAATACCAAAATTGAGACTCTATGGGGATAAACTTGAGGATGATGATGATGGTGGTGGTGACCATGAAGATGAAGATGAGCATCAAGAACAAGTATTCAGTGTGAGTGACCCTTTCAACCCTTTACTACTTACTAGTGGAGCTGACCTTACCACACTTGTTACACACCCCTCCTTGTATGACAATAACAATAGTGATATGGTAAAAACTTGTAAGAATCAACGGGGAATCAAGAATTCCAACAGGGCTGCCAAGAGAAAACTGAAGAGAGATTGCGATCTCGTAGCCGCGCTCTTGACCATGGAACAAATGGCTAATAACTTAGGCTTGGCTAGGAGCATACAAAATCATGCCAAGGAACTCTACAAGAAGGCAGAAGATAGAAGGGTATTTAGGGGACGGAGAAGACATTCAAGGGCCTCTATGGTGGCATGCTTGTACTTGGTATGTCAAGAAGAGGGATTTCCAATGACTTTAAAGGAAATTCAAAGTGTTTCTGGAGAAGCCAAAGAGAAGAATAAGCATATTAACAAGGCCATAGGAGTGTTCAAAAAGCATTTTCAGGTGGGCAGAAATTATGACAAGACACAGGCCTTGGACTTAGGTGAACGCCTGTGCACCGATCTTGGCCTTGGCAACCATGTCATCAAAGCTGTGAGAGAAGTGCTGCAAAAAGCTCTGGAGTTAATTGAAAGGAGCAGACCTTCTTCCGTTATGGCAGCAACTATATATATGGTTGATCAACTTTCTTCAGATAATATGATGCATTTCCGAGACATCAAAGAAGTTGCAAAAGCTTGTAGACTGAAGGAATATACAATAAAGAAGGCATATAGAGATCTTCATGCACTTGCCTTTGTTCTGATTCCAAGCTGGTATGCCAATGCTGAGGACATAAAGCGACTCTGCAATATTTGA
>Glyma05g06330.2 sequence type=predicted peptide gene model=Glyma05g06330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTADEEYCSDCKSYTPLVYDHKAGDSICSECGLVLESRSIEEEIPKLRLYGDKLEDDDDGGGDHEDEDEHQEQVFSVSDPFNPLLLTSGADLTTLVTHPSLYDNNNSDMVKTCKNQRGIKNSNRAAKRKLKRDCDLVAALLTMEQMANNLGLARSIQNHAKELYKKAEDRRVFRGRRRHSRASMVACLYLVCQEEGFPMTLKEIQSVSGEAKEKNKHINKAIGVFKKHFQVGRNYDKTQALDLGERLCTDLGLGNHVIKAVREVLQKALELIERSRPSSVMAATIYMVDQLSSDNMMHFRDIKEVAKACRLKEYTIKKAYRDLHALAFVLIPSWYANAEDIKRLCNI*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||