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Report for Sequence Feature Glyma05g06318

Feature Type:gene_model
Chromosome:Gm05
Start:6180995
stop:6181397
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g06318
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46020AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:16912511-16913250 REVERSE LENGTH=102 SoyBaseE_val: 5.00E-14ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_A2Q266UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding region RNP-1 (RNA recognition motif) n=1 Tax=Medicago truncatula RepID=A2Q266_MEDTR SoyBaseE_val: 1.00E-21ISS
UniRef100_I1M4U1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4U1_SOYBN SoyBaseE_val: 2.00E-25ISS

Expression Patterns of Glyma05g06318
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g06318 not represented in the dataset
Glyma05g06318 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g06318 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g071900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g06318
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g06318
>Glyma05g06318.1   sequence type=CDS   gene model=Glyma05g06318   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCCACCTTCTCTTGTTCTCTCGCTGAAGACAAAGGCTCGATCGCGATTATCCTTTAACACTACACAGCAGCAGCTCAAGAAGTTGTTCTCTCCATTCAGACTAGTTACCCAAGCGTTGGATCCTATAACCAAAAGGCCGAAAGGTTTCAGCTTTGTCTCCTTCAAATCTGAAATTGAAGCGGAAAAGGCTTTCAAAGCCATTAATGGTAGGATAATTTTCTCTTATCTCTACCCACTTTAG
Predicted protein sequences of Glyma05g06318
>Glyma05g06318.1   sequence type=predicted peptide   gene model=Glyma05g06318   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPSLVLSLKTKARSRLSFNTTQQQLKKLFSPFRLVTQALDPITKRPKGFSFVSFKSEIEAEKAFKAINGRIIFSYLYPL*






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