SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44680 | AT | Annotation by Michelle Graham. TAIR10: casein kinase II beta subunit 4 | chr2:18426898-18428166 REVERSE LENGTH=283 | SoyBase | E_val: 1.00E-136 | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0042753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of circadian rhythm | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005956 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein kinase CK2 complex | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0019887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase regulator activity | SoyBase | N/A | ISS |
| KOG3092 | KOG | Casein kinase II, beta subunit | JGI | ISS | |
| PTHR11740 | Panther | CASEIN KINASE II BETA CHAIN | JGI | ISS | |
| PF01214 | PFAM | Casein kinase II regulatory subunit | JGI | ISS | |
| UniRef100_I1K0X3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0X3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8LPD2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase Ck2 regulatory subunit 2 n=1 Tax=Nicotiana tabacum RepID=Q8LPD2_TOBAC | SoyBase | E_val: 3.00E-139 | ISS |
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Glyma05g05620 not represented in the dataset |
Glyma05g05620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g15930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g067100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g05620.2 sequence type=transcript gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGGGTGGAAGTGGATGTCCTTGAGAACAAATATCTTGTTGTGGAACCAAAAACACGGAACGAGACAGACACCAAAAAGAGGGTCCCACCGAAACAATGTTGGAGCAAGCACGCAGGAGACACGTAGACGCAGAGAGAGGGAGTTACTAAAAATGAGGTTTGGTTTGGAGGGAGTTGCATCGGCGACAAATACTGTTGTTGTTGTTGTTGGAGAAGAATGAATTCTGAGAACAAGAGACTCACAAGAAGAAGCATTTAGAATCGAAATTGGAAGAGAAGAGGGTATGAATGATTACAAAGGAAGAGAAGGAGAAAGTAGCGTTGTTGTTGTTCGGAAGCGATTCAAGGAAAAGCAACAACCCTGTCCTTCCACAAGGCCCATCATCAACCAACAACACCGTCGCTCTGCTTCCCTCCCTAACACTCAATACGAGGAATCTGAAACAGATGTCGAAGTATCTGATGTTAGTGTTTCAGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAAGTTGATGATGATTTCGTGCAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAGTCATCCCACGGAGACACGTTCACGGAGGACCAAAATGAGTTAATTGAATCTGCAGCAGAAATGCTTTATGGTCTGATTCATGCCCGATACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTACAAAAACTACAACTTTGGCCGATGTCCAAGAGTTTTCTGCTCTGGACAACCCTGCCTTCCGGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAGATATATTGCCCCAGGTGTGAAGACATGTACCACCCAAAGTCCAAGTATCAAGGTAGTATCCTTTGAAATGCCTTGTTTAACACTTGAACTCCTCTCAACTATATTTATCTTGGCTTTTGAAATTTTGGATTTTTTTATTCTTCCATCTATGCGCTTTAGCATTGCCTTCTAGATTTTGTTTAATTTGTCCGCAATCAAGGTTTTAACTCGTTAGCTATCATTTTAAGTTTTGGATTTCAAGCGTTTCACTTCTCTCTTACATTTACTTGCTGCTTGTTGCCTTTTCATTTGTATTGGTATCTCAAATAAAAAATAAAAAAGAAAATGTGTGTTGATCTCAAGGTCTTCCTCCTGT >Glyma05g05620.3 sequence type=transcript gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGGGGTGGAAGTGGATGTCCTTGAGAACAAATATCTTGTTGTGGAACCAAAAACACGGAACGAGACAGACACCAAAAAGAGGGTCCCACCGAAACAATGTTGGAGCAAGCACGCAGGAGACACGTAGACGCAGAGAGAGGGAGTTACTAAAAATGAGGTTTGGTTTGGAGGGAGTTGCATCGGCGACAAATACTGTTGTTGTTGTTGTTGGAGAAGAATGAATTCTGAGAACAAGAGACTCACAAGAAGAAGCATTTAGAATCGAAATTGGAAGAGAAGAGGGTATGAATGATTACAAAGGAAGAGAAGGAGAAAGTAGCGTTGTTGTTGTTCGGAAGCGATTCAAGGAAAAGCAACAACCCTGTCCTTCCACAAGGCCCATCATCAACCAACAACACCGTCGCTCTGCTTCCCTCCCTAACACTCAATACGAGGAATCTGAAACAGATGTCGAAGTATCTGATGTTAGTGTTTCAGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAAGTTGATGATGATTTCGTGCAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAGTCATCCCACGGAGACACGTTCACGGAGGACCAAAATGAGTTAATTGAATCTGCAGCAGAAATGCTTTATGGTCTGATTCATGCCCGATACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTACAAAAACTACAACTTTGGCCGATGTCCAAGAGTTTTCTGCTCTGGACAACCCTGCCTTCCGGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAGATATATTGCCCCAGGTGTGAAGACATGTACCACCCAAAGTCCAAGTATCAAGACATTGATGGAGCTTATTTTGGAGCTACATTTCCTCACCTTTTTCTGATGACTTATGGGAATCTGAAGCCACAGAAGCAATCACAGAACTATGTACCTAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGAAGCTGGATGGAGTTTCAAGCTTTCATCAAAGTAGAAATCTGAGCATGCCTTGCTTAGTTGTATTTTCTTTAAAATTCAGTTTCTGAAATCAGTACATTCTAGATCCACATGTTCTGTAAAGTGTGAAGATATATGCAGGCACCAACAGCAAGAGCTTAATTTGTTTTCTGCTTCAAATTCAGTGTGCCTTTGGAAAGCTTCTCTGATAGATTTTTAAGTTAAGTACTTGAATGCACTTTAAATACCAAGAAGTGGACACATGTTATTTTCTTATCAAATGAATTCTTGCCTCTTGCCAGTTTTATTTTCAATTTTTCTTTTGTTTTTAA
>Glyma05g05620.1 sequence type=CDS gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGATTACAAAGGAAGAGAAGGAGAAAGTAGCGTTGTTGTTGTTCGGAAGCGATTCAAGGAAAAGCAACAACCCTGTCCTTCCACAAGGCCCATCATCAACCAACAACACCGTCGCTCTGCTTCCCTCCCTAACACTCAATACGAGGAATCTGAAACAGATGTCGAAGTATCTGATGTTAGTGTTTCAGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAAGTTGATGATGATTTCGTGCAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAGTCATCCCACGGAGACACGTTCACGGAGGACCAAAATGAGTTAATTGAATCTGCAGCAGAAATGCTTTATGGTCTGATTCATGCCCGATACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTACAAAAACTACAACTTTGGCCGATGTCCAAGAGTTTTCTGCTCTGGACAACCCTGCCTTCCGGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAGATATATTGCCCCAGGTGTGAAGACATGTACCACCCAAAGTCCAAGTATCAAGGTAACATTGATGGAGCTTATTTTGGAGCTACATTTCCTCACCTTTTTCTGATGACTTATGGGAATCTGAAGCCACAGAAGCAATCACAGAACTATGTACCTAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGA >Glyma05g05620.2 sequence type=CDS gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGATTACAAAGGAAGAGAAGGAGAAAGTAGCGTTGTTGTTGTTCGGAAGCGATTCAAGGAAAAGCAACAACCCTGTCCTTCCACAAGGCCCATCATCAACCAACAACACCGTCGCTCTGCTTCCCTCCCTAACACTCAATACGAGGAATCTGAAACAGATGTCGAAGTATCTGATGTTAGTGTTTCAGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAAGTTGATGATGATTTCGTGCAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAGTCATCCCACGGAGACACGTTCACGGAGGACCAAAATGAGTTAATTGAATCTGCAGCAGAAATGCTTTATGGTCTGATTCATGCCCGATACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTACAAAAACTACAACTTTGGCCGATGTCCAAGAGTTTTCTGCTCTGGACAACCCTGCCTTCCGGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAGATATATTGCCCCAGGTGTGAAGACATGTACCACCCAAAGTCCAAGTATCAAGGTAGTATCCTTTGA >Glyma05g05620.3 sequence type=CDS gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGATTACAAAGGAAGAGAAGGAGAAAGTAGCGTTGTTGTTGTTCGGAAGCGATTCAAGGAAAAGCAACAACCCTGTCCTTCCACAAGGCCCATCATCAACCAACAACACCGTCGCTCTGCTTCCCTCCCTAACACTCAATACGAGGAATCTGAAACAGATGTCGAAGTATCTGATGTTAGTGTTTCAGAAGGGGATGACACATCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAAGTTGATGATGATTTCGTGCAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAGTCATCCCACGGAGACACGTTCACGGAGGACCAAAATGAGTTAATTGAATCTGCAGCAGAAATGCTTTATGGTCTGATTCATGCCCGATACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTACAAAAACTACAACTTTGGCCGATGTCCAAGAGTTTTCTGCTCTGGACAACCCTGCCTTCCGGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAGATATATTGCCCCAGGTGTGAAGACATGTACCACCCAAAGTCCAAGTATCAAGACATTGATGGAGCTTATTTTGGAGCTACATTTCCTCACCTTTTTCTGATGACTTATGGGAATCTGAAGCCACAGAAGCAATCACAGAACTATGTACCTAGAGTTTTTGGTTTCAAAGTTCACAAGTCCTGA
>Glyma05g05620.1 sequence type=predicted peptide gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDYKGREGESSVVVVRKRFKEKQQPCPSTRPIINQQHRRSASLPNTQYEESETDVEVSDVSVSEGDDTSWISWFCNLRGNEFFCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEDQNELIESAAEMLYGLIHARYILTSKGMAAMLHKYKNYNFGRCPRVFCSGQPCLPVGQSDVPRSSTVKIYCPRCEDMYHPKSKYQGNIDGAYFGATFPHLFLMTYGNLKPQKQSQNYVPRVFGFKVHKS* >Glyma05g05620.2 sequence type=predicted peptide gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDYKGREGESSVVVVRKRFKEKQQPCPSTRPIINQQHRRSASLPNTQYEESETDVEVSDVSVSEGDDTSWISWFCNLRGNEFFCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEDQNELIESAAEMLYGLIHARYILTSKGMAAMLHKYKNYNFGRCPRVFCSGQPCLPVGQSDVPRSSTVKIYCPRCEDMYHPKSKYQGSIL* >Glyma05g05620.3 sequence type=predicted peptide gene model=Glyma05g05620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNDYKGREGESSVVVVRKRFKEKQQPCPSTRPIINQQHRRSASLPNTQYEESETDVEVSDVSVSEGDDTSWISWFCNLRGNEFFCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVESSHGDTFTEDQNELIESAAEMLYGLIHARYILTSKGMAAMLHKYKNYNFGRCPRVFCSGQPCLPVGQSDVPRSSTVKIYCPRCEDMYHPKSKYQDIDGAYFGATFPHLFLMTYGNLKPQKQSQNYVPRVFGFKVHKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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