Glyma05g05440 - SoyBase

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Report for Sequence Feature Glyma05g05440

Feature Type:	gene_model
Chromosome:	Gm05
Start:	4745832
stop:	4753826
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g05440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17040	AT	Annotation by Michelle Graham. TAIR10: CLP protease R subunit 4 \| chr4:9586740-9589297 REVERSE LENGTH=305	SoyBase	E_val: 3.00E-155	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009532	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
KOG0840	KOG	ATP-dependent Clp protease, proteolytic subunit	JGI		ISS
PTHR10381	Panther	PROTEASE FAMILY S14 CLPP PROTEASE	JGI		ISS
PF00574	PFAM	Clp protease	JGI		ISS
UniRef100_I1K0W1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent Clp protease proteolytic subunit n=2 Tax=Glycine max RepID=I1K0W1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K0W1	UniRef	Annotation by Michelle Graham. Best UniRef hit: ATP-dependent Clp protease proteolytic subunit n=2 Tax=Glycine max RepID=I1K0W1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g05440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g05440 not represented in the dataset	Glyma05g05440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g05440

Paralog	Evidence	Comments
Glyma17g15720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g05440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g065900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g05440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g05440

Limit To All Plant Sequences

>Glyma05g05440.2   sequence type=transcript   gene model=Glyma05g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCCGTGCCTTCCTCCTATCTCCGTTTATTCTCCACTCACGCAGTGGCTCACTACTCACCATGGAGGTTGCCACAACAGCTTCTAGCATCGCACTCAACAAGCCCATGCTGGCATTGCCCTCTTCGTCTCGAACCGCAACCCCTATCAGAGCCATGAACTCCTCCACCTCCTCCGTCAGGACCTCTCTCTCCTCCAACTTCGTCGCTCCTTACACTGGAATCAACAGCGCCTATAGCCTCTTCTCCGGCCACAAGCTCCGACTCTCCTCCCTCAATCCGGGGTCGTTTCGCGGCTCCAACTCCAAACGAGGCGTCGTTACCATGGTTATTCCTTTTCAAAGAGGAAGTGCATGGGAGCAACCTCCACCGGACTTAGCTTCTTACTTGTACAAAAATCGAATTGTTTATTTGGGCATGTCTCTTGTTCCATCTGTCACTGAGTTGATACTAGCTGAATTTCTTTACCTTCAATATGAAGATGATGATAAGCCTATTTACCTATACATAAACTCCACTGGGACAACTAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAGGCCTTTGCAATTTATGACGTGATGAGGTATGTCAAGCCTCCTATTTTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCAGCATTGCTTTTGGCTGCTGGTGCAAAGGGTAACCGTTCTGCTTTGCCATCATCAACAATAATGATAAGACAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATGTTAACCTTGCAAGAAGAGAAGTCAATAATGTGAAGACAGAATTGGTTAAATTGTATGCAAAGCATATGGAAAAAACACCTGAGCAGATTGAAGCTGATATTCAGCGTCCAAAGTATTTTAGCCCTAGCGAAGCTGTTGAGTATGGCATCATAGATAAGGTTATATACAATGATAGGGGCAGTGAAGATCGTGGAGTTGTTTCTGACCTTAAAAAGGCACGGCTTATTTGACAGTTGGAATTTAAATTGCCATTTTCTTGGAGTTCAGGTACATCTTGAGTCATTATTGTATTAAACGGTTG

Coding sequences of Glyma05g05440

Limit To All Plant Sequences

>Glyma05g05440.1   sequence type=CDS   gene model=Glyma05g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGCCACAACAGCTTCTAGCATCGCACTCAACAAGCCCATGCTGGCATTGCCCTCTTCGTCTCGAACCGCAACCCCTATCAGAGCCATGAACTCCTCCACCTCCTCCGTCAGGACCTCTCTCTCCTCCAACTTCGTCGCTCCTTACACTGGAATCAACAGCGCCTATAGCCTCTTCTCCGGCCACAAGCTCCGACTCTCCTCCCTCAATCCGGGGTCGTTTCGCGGCTCCAACTCCAAACGAGGCGTCGTTACCATGGTTATTCCTTTTCAAAGAGGAAGTGCATGGGAGCAACCTCCACCGGACTTAGCTTCTTACTTGTACAAAAATCGAATTGTTTATTTGGGCATGTCTCTTGTTCCATCTGTCACTGAGTTGATACTAGCTGAATTTCTTTACCTTCAATATGAAGATGATGATAAGCCTATTTACCTATACATAAACTCCACTGGGACAACTAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAGGCCTTTGCAATTTATGACGTGATGAGGTATGTCAAGCCTCCTATTTTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCAGCATTGCTTTTGGCTGCTGGTGCAAAGGGTAACCGTTCTGCTTTGCCATCATCAACAATAATGATAAGACAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATGTTAACCTTGCAAGAAGAGAAGTCAATAATGTGAAGACAGAATTGGTTAAATTGTATGCAAAGCATATGGAAAAAACACCTGAGCAGATTGAAGCTGATATTCAGCGTCCAAAGTATTTTAGCCCTAGCGAAGCTGTTGAGTATGGCATCATAGATAAGGTTATATACAATGATAGGGGCAGTGAAGATCGTGGAGTTGTTTCTGACCTTAAAAAGGCACGGCTTATTTGA

>Glyma05g05440.2   sequence type=CDS   gene model=Glyma05g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTGCCACAACAGCTTCTAGCATCGCACTCAACAAGCCCATGCTGGCATTGCCCTCTTCGTCTCGAACCGCAACCCCTATCAGAGCCATGAACTCCTCCACCTCCTCCGTCAGGACCTCTCTCTCCTCCAACTTCGTCGCTCCTTACACTGGAATCAACAGCGCCTATAGCCTCTTCTCCGGCCACAAGCTCCGACTCTCCTCCCTCAATCCGGGGTCGTTTCGCGGCTCCAACTCCAAACGAGGCGTCGTTACCATGGTTATTCCTTTTCAAAGAGGAAGTGCATGGGAGCAACCTCCACCGGACTTAGCTTCTTACTTGTACAAAAATCGAATTGTTTATTTGGGCATGTCTCTTGTTCCATCTGTCACTGAGTTGATACTAGCTGAATTTCTTTACCTTCAATATGAAGATGATGATAAGCCTATTTACCTATACATAAACTCCACTGGGACAACTAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAGGCCTTTGCAATTTATGACGTGATGAGGTATGTCAAGCCTCCTATTTTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCAGCATTGCTTTTGGCTGCTGGTGCAAAGGGTAACCGTTCTGCTTTGCCATCATCAACAATAATGATAAGACAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATGTTAACCTTGCAAGAAGAGAAGTCAATAATGTGAAGACAGAATTGGTTAAATTGTATGCAAAGCATATGGAAAAAACACCTGAGCAGATTGAAGCTGATATTCAGCGTCCAAAGTATTTTAGCCCTAGCGAAGCTGTTGAGTATGGCATCATAGATAAGGTTATATACAATGATAGGGGCAGTGAAGATCGTGGAGTTGTTTCTGACCTTAAAAAGGCACGGCTTATTTGA

Predicted protein sequences of Glyma05g05440

Limit To All Plant Sequences

>Glyma05g05440.1   sequence type=predicted peptide   gene model=Glyma05g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVATTASSIALNKPMLALPSSSRTATPIRAMNSSTSSVRTSLSSNFVAPYTGINSAYSLFSGHKLRLSSLNPGSFRGSNSKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVNNVKTELVKLYAKHMEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVIYNDRGSEDRGVVSDLKKARLI*

>Glyma05g05440.2   sequence type=predicted peptide   gene model=Glyma05g05440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVATTASSIALNKPMLALPSSSRTATPIRAMNSSTSSVRTSLSSNFVAPYTGINSAYSLFSGHKLRLSSLNPGSFRGSNSKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVNNVKTELVKLYAKHMEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVIYNDRGSEDRGVVSDLKKARLI*

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