Report for Sequence Feature Glyma05g05430
Feature Type: gene_model
Chromosome: Gm05
Start: 4739876
stop: 4742199
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g05430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G17030 AT
Annotation by Michelle Graham. TAIR10: expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250
SoyBase E_val: 1.00E-106 ISS
GO:0009826 GO-bp
Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth
SoyBase N/A ISS
GO:0009828 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening
SoyBase N/A ISS
GO:0019953 GO-bp
Annotation by Michelle Graham. GO Biological Process: sexual reproduction
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
PF01357 PFAM
Pollen allergen
JGI ISS
PF03330 PFAM
Rare lipoprotein A (RlpA)-like double-psi beta-barrel
JGI ISS
UniRef100_B9SZ01 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Major pollen allergen Ory s 1, putative n=1 Tax=Ricinus communis RepID=B9SZ01_RICCO
SoyBase E_val: 1.00E-112 ISS
UniRef100_I1K0W0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K0W0_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma05g05430
Locus Gene Symbol Protein Name
EXLB6 expansin-like B gene 6
Expression Patterns of Glyma05g05430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma05g05430
Paralog Evidence Comments
Glyma17g15710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g05430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g065800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g05430
Coding sequences of Glyma05g05430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g05430.2 sequence type=CDS gene model=Glyma05g05430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACTTAGTTTTAAGCACCATTTTGGCCTTGCTTGTGTCTTACTACTTTTAGCTGCTCTGTGTAGCTCACAGGACTCTTTCACTGACTCGAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACTGTGAATGATGGAAGTGTGGCAGGAGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGCTATCAAGCAAGGTGCAAAATACCACAATATTGTGATGAGAATGGAGCATATGTGGTGGTAACAGACTATGGTGAGGGAGATAGAACAGATTTCATCATGAGCCCACGTGCCTTCTCGAGATTGGGAGGCAATGCAGATGCATCTGCAGAGTTGTTCAAATATGGTGTAGTGGATATTGAATACAGAAGGGTCCCCTGCAGTTACACTGGCTATAATGTTGTGTTTAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTAGATGGAACATACGATGTCACTGCTGTTGAGTTGTTTCAGGAAGATTGCCAAGAATGGAAGCCAATGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAGCCCACCAAGGGGTGAAATCTACTTGAGGTTCCAAGTGAGTGGCAGGGCAGGGCTTTATTGGGTGCAGTCCAAGAATGCTATTTCTAGTGATTGGAAGGCCGGAGCAACATATGACACCAATGTTCAGCTTAATTAG
Predicted protein sequences of Glyma05g05430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g05430.2 sequence type=predicted peptide gene model=Glyma05g05430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELSFKHHFGLACVLLLLAALCSSQDSFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVAGVSRLWRNGSGCGACYQARCKIPQYCDENGAYVVVTDYGEGDRTDFIMSPRAFSRLGGNADASAELFKYGVVDIEYRRVPCSYTGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQEDCQEWKPMRRAFGAMFDYSSPPRGEIYLRFQVSGRAGLYWVQSKNAISSDWKAGATYDTNVQLN*