Glyma05g05420 - SoyBase

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Report for Sequence Feature Glyma05g05420

Feature Type:	gene_model
Chromosome:	Gm05
Start:	4721438
stop:	4724297
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g05420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17030	AT	Annotation by Michelle Graham. TAIR10: expansin-like B1 \| chr4:9581817-9583181 REVERSE LENGTH=250	SoyBase	E_val: 1.00E-68	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0019953	GO-bp	Annotation by Michelle Graham. GO Biological Process: sexual reproduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_B9SZ01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Major pollen allergen Ory s 1, putative n=1 Tax=Ricinus communis RepID=B9SZ01_RICCO	SoyBase	E_val: 3.00E-73	ISS
UniRef100_I1K0V7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0V7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g05420

Locus	Gene Symbol	Protein Name
	EXLB5	expansin-like B gene 5

Expression Patterns of Glyma05g05420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g05420

Paralog	Evidence	Comments
Glyma17g15690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g05420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g065700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g05420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g05420

Limit To All Plant Sequences

>Glyma05g05420.2   sequence type=transcript   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTCCTATCTCATAAAGCCTTCTTTCATCTCATTTTTATATATACTTTTATTCGTTTCTTTCTTGTCTTTGCACCTGAGAATTTAATTTGTCATTTAGACATGGAGCTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTTATTGCCAGGAATATACTAAATCCAGGGCAACCTTTTATAGTACCTCTGATGGCTATGGGACTCCAAGTATGTGACCTGACTCTCCTCGTGTATCTATCTGTCTATCTAATTCTAGATAGTAAATATCCATCATATGTGCCGGTAAAATAAGTTATTTTATACAAAACACAATAGTTTTTTTTTTTATAAATATACATATACTTTTTCATCGTTTCATTTTTACTTATTTTCTTTTGATCCTTCTTATATCACTATATATACATGGCTTATTAATTATATCTATCTTTTTTCCTTTTCTTTTTTTCTTTTACCCTAATCTATTCCAAAATAGGAAGAAATTATTTAGTGAACATAAACAACTATTATAGTCCTTACTATTCTTTACATCACATCGAGTTGAGTGTTATTATTTTTCTTCCATAAATTGAAAACTTAAATATCGTGGGGATCCTGTATTACATAATAATTTCTCCAAAATGGGGGAATGTTAATTATTCTACATCACAATATTCGTTTGCAAGCTACGAATTACGAAGTAGGACCATGTTTTGGGAGGGGGAAGGATGAACATTTGCATGCTTCACTAGTGACCTTAAGATTTTGAAACTAAATATATTGTTTTGATTCTAGCTTGCAAAAATATTTAAAGAAGTTACTGTTAAATATGCATCCTTCTCTTTTAAGATGCCTTCTACAATATTTTCGATGCAAAGTGTGCACTATGATAGTTGATCACATAACAATTTGGTATTACATTTTAGCCGGAGCTTGTGGCTTTGGTGAATATGGAAGGAAAATGAATTGGTATGGTGGAAGAGTGGCTGGGGTGTCTGGGCTGTGGAGGAATGGAGCTGGCTGTGGCACATGTTATCAGGTGAGATGCCTAGTACCAGAATTATGTGATACCAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTCATGAGCCCACGCGCCTTCTTGAAATTGGGACGCAATGAATATTCATCTGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACATACACCGGCAATGTCTTGTTCCACATCAAGGAAACTAGCACCAACCCTGGTTACTTTGCTTTGGTCATTCTCAATGTTAATGGCATACACGATGTCACTGCTGTTGAATTGTATCAGATGGGACAATGGAAGTCACTTAACAGGAACTCTGGAGCAGTGTTTGACTTTCCTAACCCACCGAGTGGCGAAATCCGGTTGAGGTTTAGGGTGAGTGGCATGTCTGATTGGGTGGATCCCATGATTGTCATACCTAGTAACTGGCAACCTGGAAATACTTATGCCACCAAGGTTCAGCTTAAATAGAAAGAACTTCAGGAACATATATATTTCAAATAATAGGCCCTAGTATTCAGTTTGTTTCTGATATATGGTGTCACTCAATGTTCTATTGTGGAAAGGGACTAGAATAAAGGGAGATGGATATTCATGTACTTCCCATTTTAAGATTACATGTACTATGAATGAAATAAAATTGTCTTGTTTGTTGTTGTTAACATCAGGTATGTGCTTGGGATAATTATAACATGTTTTTATTAAGATCAAAGCAACAAATTAGTTAGTAGTACTTCTTCGT

>Glyma05g05420.3   sequence type=transcript   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATACATGACCCTCTCTTTGTTTCCTATCTCATAAAGCCTTCTTTCATCTCATTTTTATATATACTTTTATTCGTTTCTTTCTTGTCTTTGCACCTGAGAATTTAATTTGTCATTTAGACATGGAGCTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTTATTGCCAGGAATATACTAAATCCAGGGCAACCTTTTATAGTACCTCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGCTTTGGTGAATATGGAAGGAAAATGAATTGGTATGGTGGAAGAGTGGCTGGGGTGTCTGGGCTGTGGAGGAATGGAGCTGGCTGTGGCACATGTTATCAGGTGAGATGCCTAGTACCAGAATTATGTGATACCAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTCATGAGCCCACGCGCCTTCTTGAAATTGGGACGCAATGAATATTCATCTGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACATACACCGGCAATGTCTTGTTCCACATCAAGGAAACTAGCACCAACCCTGGTTACTTTGCTTTGGTCATTCTCAATGTTAATGGCATACACGATGTCACTGCTGTTGAATTGTATCAGGTATATTTATATCACCTTTGAAATCGCTAATTAAATTAACTATTTATATAGGTTTTAAAATTTCCTAAAACAATGATAAAAGTACTATAGCTTTTTCTATAA

Coding sequences of Glyma05g05420

Limit To All Plant Sequences

>Glyma05g05420.1   sequence type=CDS   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTTATTGCCAGGAATATACTAAATCCAGGGCAACCTTTTATAGTACCTCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGCTTTGGTGAATATGGAAGGAAAATGAATTGGTATGGTGGAAGAGTGGCTGGGGTGTCTGGGCTGTGGAGGAATGGAGCTGGCTGTGGCACATGTTATCAGGTGAGATGCCTAGTACCAGAATTATGTGATACCAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTCATGAGCCCACGCGCCTTCTTGAAATTGGGACGCAATGAATATTCATCTGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACATACACCGGCAATGTCTTGTTCCACATCAAGGAAACTAGCACCAACCCTGGTTACTTTGCTTTGGTCATTCTCAATGTTAATGGCATACACGATGTCACTGCTGTTGAATTGTATCAGATGGGACAATGGAAGTCACTTAACAGGAACTCTGGAGCAGTGTTTGACTTTCCTAACCCACCGAGTGGCGAAATCCGGTTGAGGTTTAGGGTGAGTGGCATGTCTGATTGGGTGGATCCCATGATTGTCATACCTAGTAACTGGCAACCTGGAAATACTTATGCCACCAAGGTTCAGCTTAAATAG

>Glyma05g05420.2   sequence type=CDS   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCCTTCTCTTTTAAGATGCCTTCTACAATATTTTCGATGCAAAGTGTGCACTATGATAGTTGATCACATAACAATTTGGTATTACATTTTAGCCGGAGCTTGTGGCTTTGGTGAATATGGAAGGAAAATGAATTGGTATGGTGGAAGAGTGGCTGGGGTGTCTGGGCTGTGGAGGAATGGAGCTGGCTGTGGCACATGTTATCAGGTGAGATGCCTAGTACCAGAATTATGTGATACCAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTCATGAGCCCACGCGCCTTCTTGAAATTGGGACGCAATGAATATTCATCTGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACATACACCGGCAATGTCTTGTTCCACATCAAGGAAACTAGCACCAACCCTGGTTACTTTGCTTTGGTCATTCTCAATGTTAATGGCATACACGATGTCACTGCTGTTGAATTGTATCAGATGGGACAATGGAAGTCACTTAACAGGAACTCTGGAGCAGTGTTTGACTTTCCTAACCCACCGAGTGGCGAAATCCGGTTGAGGTTTAGGGTGAGTGGCATGTCTGATTGGGTGGATCCCATGATTGTCATACCTAGTAACTGGCAACCTGGAAATACTTATGCCACCAAGGTTCAGCTTAAATAG

>Glyma05g05420.3   sequence type=CDS   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCATACTGCTCTTTCCTGCACTGTGTTATTGCCAGGAATATACTAAATCCAGGGCAACCTTTTATAGTACCTCTGATGGCTATGGGACTCCAACCGGAGCTTGTGGCTTTGGTGAATATGGAAGGAAAATGAATTGGTATGGTGGAAGAGTGGCTGGGGTGTCTGGGCTGTGGAGGAATGGAGCTGGCTGTGGCACATGTTATCAGGTGAGATGCCTAGTACCAGAATTATGTGATACCAATGGAGCATACCTGGTGGCAACAGACCAAGGTTATGGAGACAGAACAGACTTCGTCATGAGCCCACGCGCCTTCTTGAAATTGGGACGCAATGAATATTCATCTGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACATACACCGGCAATGTCTTGTTCCACATCAAGGAAACTAGCACCAACCCTGGTTACTTTGCTTTGGTCATTCTCAATGTTAATGGCATACACGATGTCACTGCTGTTGAATTGTATCAGGTATATTTATATCACCTTTGA

Predicted protein sequences of Glyma05g05420

Limit To All Plant Sequences

>Glyma05g05420.1   sequence type=predicted peptide   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSFKHQLGLVCVILLFPALCYCQEYTKSRATFYSTSDGYGTPTGACGFGEYGRKMNWYGGRVAGVSGLWRNGAGCGTCYQVRCLVPELCDTNGAYLVATDQGYGDRTDFVMSPRAFLKLGRNEYSSEELKKYGTVDIEYKRVPCTYTGNVLFHIKETSTNPGYFALVILNVNGIHDVTAVELYQMGQWKSLNRNSGAVFDFPNPPSGEIRLRFRVSGMSDWVDPMIVIPSNWQPGNTYATKVQLK*

>Glyma05g05420.2   sequence type=predicted peptide   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHPSLLRCLLQYFRCKVCTMIVDHITIWYYILAGACGFGEYGRKMNWYGGRVAGVSGLWRNGAGCGTCYQVRCLVPELCDTNGAYLVATDQGYGDRTDFVMSPRAFLKLGRNEYSSEELKKYGTVDIEYKRVPCTYTGNVLFHIKETSTNPGYFALVILNVNGIHDVTAVELYQMGQWKSLNRNSGAVFDFPNPPSGEIRLRFRVSGMSDWVDPMIVIPSNWQPGNTYATKVQLK*

>Glyma05g05420.3   sequence type=predicted peptide   gene model=Glyma05g05420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSFKHQLGLVCVILLFPALCYCQEYTKSRATFYSTSDGYGTPTGACGFGEYGRKMNWYGGRVAGVSGLWRNGAGCGTCYQVRCLVPELCDTNGAYLVATDQGYGDRTDFVMSPRAFLKLGRNEYSSEELKKYGTVDIEYKRVPCTYTGNVLFHIKETSTNPGYFALVILNVNGIHDVTAVELYQVYLYHL*

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