Glyma05g05260 - SoyBase

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Report for Sequence Feature Glyma05g05260

Feature Type:	gene_model
Chromosome:	Gm05
Start:	4565283
stop:	4568952
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g05260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17530	AT	Annotation by Michelle Graham. TAIR10: RAB GTPase homolog 1C \| chr4:9773721-9775424 REVERSE LENGTH=202	SoyBase	E_val: 8.00E-139	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0035618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: root hair	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0084	KOG	GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF227	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_C6T9G0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9G0_SOYBN	SoyBase	E_val: 4.00E-149	ISS
UniRef100_Q40203	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RAB1C n=1 Tax=Lotus japonicus RepID=Q40203_LOTJA	SoyBase	E_val: 3.00E-147	ISS

Expression Patterns of Glyma05g05260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g05260 not represented in the dataset	Glyma05g05260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g05260

Paralog	Evidence	Comments
Glyma17g15550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g05260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g064300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g05260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g05260

Limit To All Plant Sequences

>Glyma05g05260.2   sequence type=transcript   gene model=Glyma05g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCCTCACGCATTTCCTCGTTTTTTTCTTCCCTTTTCTCTTTCTCCGGCGACGATCTCAGATTCCGGCCACTCCTCTCGCCGGCGAGCCCTTACTCTTCCCTCCTCCGTCGAGCCCTCTCCGATTCGAATCGTTCCCAGCCTCGCACCACCATGAATCCCGAATACGATTATTTGTTCAAGCTTTTGCTGATTGGAGATTCTGGTGTAGGCAAGTCATGTCTTCTCCTGAGGTTTGCTGATGATTCATACCTTGACAGCTATATCAGTACCATTGGAGTGGACTTTAAAATCCGCACTGTGGAGCAGGATGGGAAGACTATTAAACTTCAAATTTGGGACACTGCGGGTCAGGAACGTTTCCGAACAATCACTAGCAGCTATTATCGTGGGGCTCATGGCATTATTTGGCTGAATGAAATTGACCGTTATGCAAGTGAAAATGTTAACAAGCTTCTAGTTGGAAACAAGTGCGATCTCACGGCAAATAAAGTTGTGTCCTATGAGACAGCAAAGGCTTTTGCAGATGAAATTGGAATTCCCTTCATGGAAACTAGTGCTAAAAATGCCACCAATGTTGAACAGGCTTTCATGGCCATGGCTGCTGAAATTAAAAACAGAATGGCAAGCCAGCCAGTGAACAATGCGAGGCCTCCAACAGTTCAAATTCGAGGACAGCCAGTGAACCAGAAGGCTGGTTGCTGCTCGACTTAGAGAGAGACGAAGTATTTGGGGTCTTAGAAGTTCATGTGTCTCAGTGGCATCTAAAACTAGCTTTTCACATTGCTTGCATATCAAGATTGTTCGTCATGATTTGTTCCTCTTATCGTTAAGCCGTTGTTAAAACTTCCATTATTTTCTATGTATTTGATTTTAAAAGAAAAAACATTTGTACAAAATTAGGAATATTGGTGAATAGCAGTATTTGCCTTGTTCTTTGTCCCTCGAACTTTCATCTCATTTCAACAGCTTCTACATCTATTCTATTGTTCTCGTGCCTCTCCGTAGGAGTAGAATCTTGTTCAATTGCACAAAACTCTTGTTGTAAGTCTATGAAATAAAAATAATAGGAAACTGAATTTTTTATTTATA

Coding sequences of Glyma05g05260

Limit To All Plant Sequences

>Glyma05g05260.1   sequence type=CDS   gene model=Glyma05g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCCGAATACGATTATTTGTTCAAGCTTTTGCTGATTGGAGATTCTGGTGTAGGCAAGTCATGTCTTCTCCTGAGGTTTGCTGATGATTCATACCTTGACAGCTATATCAGTACCATTGGAGTGGACTTTAAAATCCGCACTGTGGAGCAGGATGGGAAGACTATTAAACTTCAAATTTGGGACACTGCGGGTCAGGAACGTTTCCGAACAATCACTAGCAGCTATTATCGTGGGGCTCATGGCATTATTGTTGTTTATGATGTCACTGACCAAGAGAGCTTTAATAATGTTAAGCAGTGGCTGAATGAAATTGACCGTTATGCAAGTGAAAATGTTAACAAGCTTCTAGTTGGAAACAAGTGCGATCTCACGGCAAATAAAGTTGTGTCCTATGAGACAGCAAAGGCTTTTGCAGATGAAATTGGAATTCCCTTCATGGAAACTAGTGCTAAAAATGCCACCAATGTTGAACAGGCTTTCATGGCCATGGCTGCTGAAATTAAAAACAGAATGGCAAGCCAGCCAGTGAACAATGCGAGGCCTCCAACAGTTCAAATTCGAGGACAGCCAGTGAACCAGAAGGCTGGTTGCTGCTCGACTTAG

>Glyma05g05260.2   sequence type=CDS   gene model=Glyma05g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCCGAATACGATTATTTGTTCAAGCTTTTGCTGATTGGAGATTCTGGTGTAGGCAAGTCATGTCTTCTCCTGAGGTTTGCTGATGATTCATACCTTGACAGCTATATCAGTACCATTGGAGTGGACTTTAAAATCCGCACTGTGGAGCAGGATGGGAAGACTATTAAACTTCAAATTTGGGACACTGCGGGTCAGGAACGTTTCCGAACAATCACTAGCAGCTATTATCGTGGGGCTCATGGCATTATTTGGCTGAATGAAATTGACCGTTATGCAAGTGAAAATGTTAACAAGCTTCTAGTTGGAAACAAGTGCGATCTCACGGCAAATAAAGTTGTGTCCTATGAGACAGCAAAGGCTTTTGCAGATGAAATTGGAATTCCCTTCATGGAAACTAGTGCTAAAAATGCCACCAATGTTGAACAGGCTTTCATGGCCATGGCTGCTGAAATTAAAAACAGAATGGCAAGCCAGCCAGTGAACAATGCGAGGCCTCCAACAGTTCAAATTCGAGGACAGCCAGTGAACCAGAAGGCTGGTTGCTGCTCGACTTAG

Predicted protein sequences of Glyma05g05260

Limit To All Plant Sequences

>Glyma05g05260.1   sequence type=predicted peptide   gene model=Glyma05g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPTVQIRGQPVNQKAGCCST*

>Glyma05g05260.2   sequence type=predicted peptide   gene model=Glyma05g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPTVQIRGQPVNQKAGCCST*

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