SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12230 | AT | Annotation by Michelle Graham. TAIR10: Aldolase superfamily protein | chr1:4148050-4150708 FORWARD LENGTH=405 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 5-phosphoribose 1-diphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0009052 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt, non-oxidative branch | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process to lactate and acetate | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004801 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2772 | KOG | Transaldolase | JGI | ISS | |
| PTHR10683 | Panther | TRANSALDOLASE | JGI | ISS | |
| PF00923 | PFAM | Transaldolase | JGI | ISS | |
| UniRef100_G7JK42 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transaldolase n=1 Tax=Medicago truncatula RepID=G7JK42_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K0L7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0L7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g04300 not represented in the dataset |
Glyma05g04300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g14760 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g056400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g04300.1 sequence type=CDS gene model=Glyma05g04300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCACTCACCTTGCAAACTCCGCCTTCTACAACTCTCTCTTCTGCATCTCCCATTCACAGAACAATAACAAGATACACCACATTCTCCTTCTCGCTTCGTCCTCCAACAACTCTTCACTTCAATCCCCACAGGTCCCTCCCTCTAATTCGCGCTTCCAATTCTTCTATCAATGCCGCTTCGACCACTGAACTGGACGCTGTGTCCGCCTTCAGCGAGATCGTTCCCGACACCGTCGTTTTCGATGATTTCGAAAAGTTTCCTCCAACTGCTGCTACTGTTAGTTCATCGCTTCTCTTGGGAATATGTGGCCTTCCAGACACCATTTTTAGGAATGCTGTGGAAATGGCTTTAGCTGATTCTGAGTGTTATGGACTTGAAAATCCTAACGCGCGATTGTCTTGTTTTGTCAACAAGGCTTTCGCGAATATCGGTAGTGACATGGCAAAGCTTGTCCCTGGCCGTGTTTCGACAGAAGTGGATGCGCGGCTTGCTTATGACACACATGCCATTATCAGGAAGGTGCATGACCTGTTGAAGTTGTACAATGATAGCAATGTACCTCCGCAACGTCTGTTGTTTAAAATTCCTTCCACTTGGCAAGGAATAGAGGCTGCAAGGTTGCTGGAATCCGAAGGCATACAGACACATTTGACCTTTGTCTACAGTTTTGCTCAAGCTGCAGCTGCAGCTCAAGCTGGTGCTTCTGTCATTCAAATTTTTGTTGGTCGCATAAGGGATTGGGCACGTAATCATTCTGGTGACACAGAGATAGAATCTGCTCAGCTAAGAGGAGAGGATCCAGGGTTGGCATTGGTGACAAAAGCTTACAATTATATTCACAAATATGGACATAAGTCAAAGTTGATGGCAGCAGCAGTTCGCAACAAACAGGACCTATTTAGTCTTCTGGGGGTTGACTATATCATAGCTCCTTTAAAGGTATTGCAGTCTCTCAAAGAATCTGTTGCTTCTCCTGATGAGAAGTACTCTTTTGTTAGGAGGTTATCCCCTCAGTCTGCTGCCAAGTACACATTTAGTGATGAAGAGCTTGTTAGATGGGACGAAGATAGCCTCTCAAAGGCCATGGGGCCTGCAGCTGTGCAGCTTCTGGCTGCTGGACTGGATGGCCATGCTGATCAAGCAAAGCGGGTGGAAGAGTTATTTGGGAAAATTTGGCCACCACCAAATGTATGA
>Glyma05g04300.1 sequence type=predicted peptide gene model=Glyma05g04300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLTLQTPPSTTLSSASPIHRTITRYTTFSFSLRPPTTLHFNPHRSLPLIRASNSSINAASTTELDAVSAFSEIVPDTVVFDDFEKFPPTAATVSSSLLLGICGLPDTIFRNAVEMALADSECYGLENPNARLSCFVNKAFANIGSDMAKLVPGRVSTEVDARLAYDTHAIIRKVHDLLKLYNDSNVPPQRLLFKIPSTWQGIEAARLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRIRDWARNHSGDTEIESAQLRGEDPGLALVTKAYNYIHKYGHKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESVASPDEKYSFVRRLSPQSAAKYTFSDEELVRWDEDSLSKAMGPAAVQLLAAGLDGHADQAKRVEELFGKIWPPPNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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