Glyma05g04250 - SoyBase

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Report for Sequence Feature Glyma05g04250

Feature Type:	gene_model
Chromosome:	Gm05
Start:	3353192
stop:	3359963
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g04250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12260	AT	Annotation by Michelle Graham. TAIR10: NAC 007 \| chr1:4163058-4164486 REVERSE LENGTH=395	SoyBase	E_val: 4.00E-152	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9T2V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T2V2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K0L0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0L0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g04250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g04250

Paralog	Evidence	Comments
Glyma17g14700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g04250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g055900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g04250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g04250

Limit To All Plant Sequences

>Glyma05g04250.3   sequence type=transcript   gene model=Glyma05g04250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATCTTTGTTGTTGCGTTCTCTCTTCTCCTCCGGCCCCGTTCACCTCAAACGCTAACACCACATCATTCTTTTTATGTCTCCATCAGTTGCTGGTGGGTGGACTTAGAGGCTGACATCTCTTTCTCTTTCTCTCTCTCATTCTCAAGCCGTTTTAGCGCCACCCTTTTATCACTCAGCTTACTGCAATCTAGCTCCAAACCCAAATAAAGAGAGAGAGAGAGAGAAACTCTGGAGAGAGGGGTTCATGAATGCTTTATTAGGGTTCTCATATTTGCTTCGTTTCATCCTCTTCTACTCCTGAAATCACTCCTTTTCCTTCTCTTTTCTCTCTTCTCTTTCTTAATAGTCCTCGGGATCCGATCTCTCTCTTCTCTTGTGGGTTTTTTCTTTTTTGATTTGGAACTCTCTCTTCTTGTGGATAGCTAGCAATTACTACTACATAAGACGCAGTTGGTGAAAGCAAAGCTGTTTGAGGACAAAGAAGGAGGAGATTGAGTTCAATTCCCGAGGAAAACATTTACTACTAACTTTTTCTACTTTGCTTTTCTTGTCTTCTGTTTTTGTCCTCTTGTGTCTCCCTGCCTTTGTTTCAGTGCTGTTTCTTTTTGTCTAGTTCTGTTGGAACTTGGATTTCATTTGTGACCAAGTTACGACAAAAAGGCTGTTGATGATAGAGAGCTTAAACAACTTTCTCATCTACCCTATATACCTCAAGATTTAGTGCTGCGTACTAAGTTTTTGGTTTCATCAGATCCACACCGGAATTCTATTCAGACTCTATACATAGTTACATCGATCCTCGCGGGGAGAGCCAAATAACGAGATACACAGGTTTTAATTCTTTGAGAGCGGAAATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATACCACCATCACCAACAACAGCACCACCACCATCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGAATTTTTATATATATATATATATATATAGTAACTATAAATAAGATACGATGCATAATACCAATTATAGGAAGTACGTACAAGTGAATGTTGGAAAAAAAAGACCATAGTGTTGTTGCTACGTGTTGTTGTACATAAGAAGCCTAAAATGTTTTATATATCATTAGTTGTTGAACCTCTTGAGGCTGGAGTATATGGACTGAAAATGTATCCATTAGTTGCAATTCTTCAGTTGCAAAAAATACGCCTATATATAGAAAACAAATTAGTGCTTCAAGGTCAACTCTATAGCAGGAAGTGATCCTTATGATGGAAAGAGTTCTATGAATTAATGTTACAAGTGATTTGTTCACTACAGCTTAATGCTGCATTTATTACAAAAGTTACATATGTTTTCA

Coding sequences of Glyma05g04250

Limit To All Plant Sequences

>Glyma05g04250.2   sequence type=CDS   gene model=Glyma05g04250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATACCACCATCACCAACAACAGCACCACCACCATCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA

>Glyma05g04250.3   sequence type=CDS   gene model=Glyma05g04250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATACCACCATCACCAACAACAGCACCACCACCATCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA

Predicted protein sequences of Glyma05g04250

Limit To All Plant Sequences

>Glyma05g04250.2   sequence type=predicted peptide   gene model=Glyma05g04250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTSQEEGWVVCRVFKKRMTTTQKVGEYDQSPCWYDEQVSFMQDLESPRRNISQTYASYHHHQQQHHHHPCKPELMELQYNNIPHDAFLQLPQLESPKVTQSSCSVVPYGYESNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNNQDVSKETSYSNAPIFHVAEQISVAANGSKKEQVSQEYASTSTSSYQIDLWK*

>Glyma05g04250.3   sequence type=predicted peptide   gene model=Glyma05g04250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTSQEEGWVVCRVFKKRMTTTQKVGEYDQSPCWYDEQVSFMQDLESPRRNISQTYASYHHHQQQHHHHPCKPELMELQYNNIPHDAFLQLPQLESPKVTQSSCSVVPYGYESNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNNQDVSKETSYSNAPIFHVAEQISVAANGSKKEQVSQEYASTSTSSYQIDLWK*

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