Glyma05g04230 - SoyBase

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Report for Sequence Feature Glyma05g04230

Feature Type:	gene_model
Chromosome:	Gm05
Start:	3334272
stop:	3338912
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g04230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62710	AT	Annotation by Michelle Graham. TAIR10: beta vacuolar processing enzyme \| chr1:23224070-23226857 REVERSE LENGTH=486	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006624	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuolar protein processing	SoyBase	N/A	ISS
GO:0004197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity	SoyBase	N/A	ISS
KOG1348	KOG	Asparaginyl peptidases	JGI		ISS
PTHR12000	Panther	HEMOGLOBINASE FAMILY MEMBER	JGI		ISS
PTHR12000:SF2	Panther	HEMOGLOBINASE	JGI		ISS
PF01650	PFAM	Peptidase C13 family	JGI		ISS
UniRef100_I1K0K8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0K8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LLQ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM40 n=1 Tax=Glycine max RepID=Q9LLQ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g04230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g04230

Paralog	Evidence	Comments
Glyma17g14680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g04230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g055700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g04230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g04230

Limit To All Plant Sequences

>Glyma05g04230.1   sequence type=CDS   gene model=Glyma05g04230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTGATCGCTCCCTTACGAGGTGCTGTAGCCTCGTACTGTGGTCGTGGATGTTGCTGAGGATGATGATGGCGCAGGGTGCAGCCGCGAGGGCCAACCGGAAGGAGTGGGACTCGGTCATAAAGTTACCGGCTGAACCGGTCGATGCTGACTCGGATCATGAAGTGGGAACACGATGGGCGGTTCTTGTGGCTGGTTCAAACGGCTATGGAAACTACAGGCATCAAGCAGATGTGTGCCATGCGTACCAGTTGCTGATAAAAGGTGGGCTAAAAGAAGAGAACATAGTGGTGTTTATGTACGATGACATAGCTACAGACGAGTTAAATCCCAGACCTGGAGTCATCATCAACCACCCTGAGGGACAAGATGTGTATGCTGGTGTTCCTAAGGATTACACCGGTGAGAATGTGACGGCCCAGAACCTCTTTGCCGTTATTCTTGGAGACAAGAATAAAGTGAAGGGAGGAAGTGGCAAAGTGATCAATAGCAAACCTGAGGACAGAATATTTATATACTACTCTGATCATGGAGGTCCGGGAGTTCTTGGGATGCCAAACATGCCATACCTTTATGCTATGGACTTTATTGAAGTCTTGAAGAAGAAACATGCATCTGGAGGTTACAAGAAGATGGTCATATACGTGGAAGCTTGTGAAAGTGGGAGCATGTTTGAGGGTATAATGCCTAAGGATCTGCAGATTTATGTCACAACTGCATCCAATGCACAAGAGAATAGTTGGGGAACTTATTGTCCTGGAATGGATCCTTCTCCACCTCCAGAGTACATCACTTGCCTAGGGGATTTGTACAGTGTTGCTTGGATGGAAGATAGTGAGACTCATAATCTAAAAAGGGAGTCCGTGAAACAACAATACAAATCGGTAAAGCAACGGACTTCAAATTTCAACAACTATGCGATGGGTTCTCATGTGATGCAATACGGTGACACAAACATCACAGCTGAAAAGCTTTATTTATACCAAGGTTTTGATCCTGCCGCTGTGAACTTCCCTCCACAGAACGGAAGGCTAGAAACTAAAATGGAAGTTGTTAACCAAAGAGATGCAGAACTTTTCTTCATGTGGCAAATGTATCAGAGATCAAACCATCAGCCAGAAAAGAAGACAGACATCCTCAAACAGATAGCGGAGACAGTGAAGCATAGGAAACACATAGATGGTAGCGTGGAATTGATTGGAGTTTTATTGTATGGACCAGGAAAAGGTTCTTCTGTTCTACAATCCATGAGGGCTCCTGGTCTTGCCCTTGTTGATGACTGGACATGCCTAAAATCAATGGTTCGGGTGTTTGAGACTCACTGTGGGACACTGACTCAGTATGGCATGAAACACATGCGAGCATTTGCCAACATTTGCAACAGCGGTGTTTCTGAGGCCTCCATGGAAGAGGTTTGTGTGGCAGCTTGTGAAGGCTACGATTCTGGGCTATTACATCCATCAAACAAAGGCTATAGTGCTTGA

Predicted protein sequences of Glyma05g04230

Limit To All Plant Sequences

>Glyma05g04230.1   sequence type=predicted peptide   gene model=Glyma05g04230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVDRSLTRCCSLVLWSWMLLRMMMAQGAAARANRKEWDSVIKLPAEPVDADSDHEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATDELNPRPGVIINHPEGQDVYAGVPKDYTGENVTAQNLFAVILGDKNKVKGGSGKVINSKPEDRIFIYYSDHGGPGVLGMPNMPYLYAMDFIEVLKKKHASGGYKKMVIYVEACESGSMFEGIMPKDLQIYVTTASNAQENSWGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRESVKQQYKSVKQRTSNFNNYAMGSHVMQYGDTNITAEKLYLYQGFDPAAVNFPPQNGRLETKMEVVNQRDAELFFMWQMYQRSNHQPEKKTDILKQIAETVKHRKHIDGSVELIGVLLYGPGKGSSVLQSMRAPGLALVDDWTCLKSMVRVFETHCGTLTQYGMKHMRAFANICNSGVSEASMEEVCVAACEGYDSGLLHPSNKGYSA*

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