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Report for Sequence Feature Glyma05g04210

Feature Type:gene_model
Chromosome:Gm05
Start:3318573
stop:3322584
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g04210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62750AT Annotation by Michelle Graham. TAIR10: Translation elongation factor EFG/EF2 protein | chr1:23233622-23236321 REVERSE LENGTH=783 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006354GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006414GO-bp Annotation by Michelle Graham. GO Biological Process: translational elongation SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009791GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003746GO-mf Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
GO:0008135GO-mf Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding SoyBaseN/AISS
KOG0465 KOG Mitochondrial elongation factor JGI ISS
PTHR23115Panther TRANSLATION FACTOR JGI ISS
PTHR23115:SF84Panther JGI ISS
PF00009PFAM Elongation factor Tu GTP binding domain JGI ISS
PF00679PFAM Elongation factor G C-terminus JGI ISS
PF03144PFAM Elongation factor Tu domain 2 JGI ISS
PF03764PFAM Elongation factor G, domain IV JGI ISS
UniRef100_I1K0K6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0K6_SOYBN SoyBaseE_val: 0ISS
UniRef100_P34811UniRef Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor G, chloroplastic n=1 Tax=Glycine max RepID=EFGC_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g04210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g04210 not represented in the dataset
Glyma05g04210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g04210
ParalogEvidenceComments
Glyma17g14650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g04210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g055500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g04210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g04210
>Glyma05g04210.1   sequence type=CDS   gene model=Glyma05g04210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGGAGTCATCACTGAGGGTGGCGACTCCCACTATTTGCAACCTCAATGGTTCTCAGAGAAGACCAACCACTCTCTCTCCGCTTCGCTTCATGGGTTTTAGCCCTCGACCCTCTCACTCTCTCACTTCCTCTTCCCTTTCACACTTCTTCGGGAGCACAAGAATTAACTCCAATTCTTCCTCCATTTCACGCCAACATGCTCCAAGAAGAAACTTTTCCGTTTTCGCCATGTCCGGCGATGATGCAAAGCGGAGTGTTCCATTGAAGGATTACCGCAACATCGGCATCATGGCTCACATAGATGCTGGAAAGACTACTACAACGGAACGCATTTTGTACTATACTGGAAGGAACTACAAAATTGGAGAGGTGCATGAGGGAACAGCAACTATGGACTGGATGGAACAAGAACAAGAGAGGGGGATTACCATTACTTCTGCTGCAACCACTACATTCTGGAACAAGCACCGGATCAACATTATTGATACTCCTGGTCACGTTGACTTCACCTTAGAAGTGGAGCGTGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTGGAGCCACAATCAGAAACTGTGTGGAGGCAGGCTGATAAATACGGTGTCCCGCGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAACTTTTATCGAACAAGAGACATGATAGTAACGAATTTGGGTGCTAAACCACTTGTAATTCAGTTACCAATTGGTTCAGAGGATAACTTTAAGGGAGTTATAGACCTTGTTAGGAATAAGGCTATAGTTTGGTCTGGAGAAGAGCTGGGTGCCAAGTTTGATATTGTAGATGTTCCAGAAGATCTTCAAGAGCAGGCTCAGGAATACCGAGCCCAGATGATAGAAACCATAGTTGAGTTCGATGACCAGGCTATGGAGAACTACCTGGAAGGAATTGAACCGGATGAAGAAACTATAAAAAAATTAATAAGGAAGGGAACCATATCAGCCAGTTTTGTGCCAGTGATGTGTGGCTCAGCTTTCAAAAACAAGGGAGTCCAACCATTGCTCGATGCGGTAGTGGATTATCTACCATCACCACTTGACTTGCCAGCAATGAAGGGCAGTGACCCTGAAAACCCAGAAGAAACAATAGAGAGGGTAGCAAGTGATGATGAACCATTTGCTGGACTGGCTTTTAAGATCATGAGTGATCCATTTGTAGGCTCCCTTACGTTTGTCAGGGTGTATGCTGGGAAGCTAAGTGCTGGGTCTTACGTACTCAATGCAAACAAAGGGAAAAAGGAGAGAATTGGTAGACTTTTAGAAATGCATGCAAACAGCAGAGAGGATGTTAAAGTAGCTTTAGCTGGTGATATTATTGCACTTGCAGGTTTGAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAATCCAATTGTGCTTGAGCGGATGGACTTCCCAGATCCTGTTATTAAGGTTGCTATTGAACCAAAAACTAAAGCTGATGTTGACAAGATGGCAACTGGTTTAATCAAGCTTGCACAGGAAGACCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAGACAGTGATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATCGGCTTAAAAGAGAATTTAAGGTGGAAGCTAATGTTGGTGCCCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAACTGCAGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAAGGTCAGTTTGCAGATATCACCGTCCGGTTTGAACCCATGGACCCAGGTAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCAAAGGAATACATTCCTGGTGTGATGAAAGGATTGGAAGAGTGTATGAGCAATGGTGTGCTTGCTGGCTTTCCGGTCGTTGATGTACGAGCAGTACTCACAGATGGTTCTTACCACGATGTAGATTCAAGTGTGTTGGCTTTCCAGTTGGCAGCAAGAGGAGCTTTTAGGGAAGGAATAAGAAAAGCTGGACCAAGGATGCTTGAGCCTATAATGAAGGTTGAAGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGACAGATCAACAGTTTTGGTGACAAACCTGGTGGCCTTAAGGTGGTTGATGCCCTGGTACCTCTTGCTGAGATGTTCCAGTATGTCAGCACACTCAGAGGGATGACAAAGGGCCGTGCATCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCTCAGCACATTCAGAACCAACTTGCCACAAAAGAGCAAGAAGTTGCCGCTTAA
Predicted protein sequences of Glyma05g04210
>Glyma05g04210.1   sequence type=predicted peptide   gene model=Glyma05g04210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAESSLRVATPTICNLNGSQRRPTTLSPLRFMGFSPRPSHSLTSSSLSHFFGSTRINSNSSSISRQHAPRRNFSVFAMSGDDAKRSVPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFYRTRDMIVTNLGAKPLVIQLPIGSEDNFKGVIDLVRNKAIVWSGEELGAKFDIVDVPEDLQEQAQEYRAQMIETIVEFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGSDPENPEETIERVASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGKLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIIALAGLKDTITGETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKTAEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPKEYIPGVMKGLEECMSNGVLAGFPVVDVRAVLTDGSYHDVDSSVLAFQLAARGAFREGIRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLATKEQEVAA*






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