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Report for Sequence Feature Glyma05g04170

Feature Type:gene_model
Chromosome:Gm05
Start:3280086
stop:3286011
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g04170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12520AT Annotation by Michelle Graham. TAIR10: copper chaperone for SOD1 | chr1:4267277-4268900 REVERSE LENGTH=320 SoyBaseE_val: 5.00E-142ISS
GO:0006801GO-bp Annotation by Michelle Graham. GO Biological Process: superoxide metabolic process SoyBaseN/AISS
GO:0006878GO-bp Annotation by Michelle Graham. GO Biological Process: cellular copper ion homeostasis SoyBaseN/AISS
GO:0015680GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular copper ion transport SoyBaseN/AISS
GO:0019430GO-bp Annotation by Michelle Graham. GO Biological Process: removal of superoxide radicals SoyBaseN/AISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016532GO-mf Annotation by Michelle Graham. GO Molecular Function: superoxide dismutase copper chaperone activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG4656 KOG Copper chaperone for superoxide dismutase JGI ISS
PTHR10003Panther CU/ZN SUPEROXIDE DISMUTASE JGI ISS
PTHR10003:SF27Panther COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE JGI ISS
PF00080PFAM Copper/zinc superoxide dismutase (SODC) JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_Q9BBU5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cu/Zn-superoxide dismutase copper chaperone n=1 Tax=Glycine max RepID=Q9BBU5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9BBU5UniRef Annotation by Michelle Graham. Best UniRef hit: Cu/Zn-superoxide dismutase copper chaperone n=1 Tax=Glycine max RepID=Q9BBU5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma05g04170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g04170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g055000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g04170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g04170
>Glyma05g04170.1   sequence type=CDS   gene model=Glyma05g04170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTCTGAGGTCAATAGCAACAACAGCAATTGCTACTATACCTGCAGCCTTAGCATTCTCATCATCTTCATCATCTTCTTTCCCTCGCTCTTCCCAATCCCCCAATCCCCAAAATAGATTAGGTCTTGTCAAAACACTTGCTACTCCTCCCTCTGCTCTCCACATGGACCACAAACTCTCTTCTCAGCCTGACGCTGTCTTGCCCGAGTTACTGACGGAGTTCATGGTGGACATGAAATGCGAAGGTTGTGTTAATGCTGTCAAAAATAAGTTGAACGAGATAAATGGAGTTAAGAACGTAGAGGTGGACTTGAGCAATCAGGTTGTGAGGATTCTCGGTTCAACGCCGGTGAAGACTATGACTGAAGCTTTGGAGCAGACTGGTAGAAAAGCCCGGTTAATTGGACAAGGAGTGCCGGAAGACTTCTTAATATCTGCTGCTGTTTCCGAATTCAAAGGTCCAGATATTTTTGGTGTTGTTCGCCTGGCTCAAGTAAATATGGAACTGGCTAGGATTGAAGCCAACTTTAGCGGGCTGTCGCCAGGAAAGCATGGTTGGTCTATTAATGAGTTTGGTGATCTGACTAGAGGTGCAGCAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAGCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCTATAGTGGGGTCAAAGAAAAGCTGAGGGTGGCTGATCTTATTGGACGATCTGTGGTGGTATATGCAACTGAAGATAAATCAGAACATGGTATAACTGCTGCAGTAATTGCCAGAAGTGCTGGGGTGGGTGAGAACTATAAGAAACTCTGTACGTGTGATGGCACCACCATATGGGAGGCCACGGATACAGATTTTGTTACTAGCAAGGTCTGA
Predicted protein sequences of Glyma05g04170
>Glyma05g04170.1   sequence type=predicted peptide   gene model=Glyma05g04170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLRSIATTAIATIPAALAFSSSSSSSFPRSSQSPNPQNRLGLVKTLATPPSALHMDHKLSSQPDAVLPELLTEFMVDMKCEGCVNAVKNKLNEINGVKNVEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLIGQGVPEDFLISAAVSEFKGPDIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKMFNPVNEENSKEPLGDLGTLEANEKGEAFYSGVKEKLRVADLIGRSVVVYATEDKSEHGITAAVIARSAGVGENYKKLCTCDGTTIWEATDTDFVTSKV*






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