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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12500 | AT | Annotation by Michelle Graham. TAIR10: Nucleotide-sugar transporter family protein | chr1:4263542-4264957 REVERSE LENGTH=361 | SoyBase | E_val: 0 | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0030243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008514 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1441 | KOG | Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter | JGI | ISS | |
| KOG1443 | KOG | Predicted integral membrane protein | JGI | ISS | |
| PTHR11132 | Panther | SOLUTE CARRIER FAMILY 35 | JGI | ISS | |
| PF00892 | PFAM | EamA-like transporter family | JGI | ISS | |
| PF03151 | PFAM | Triose-phosphate Transporter family | JGI | ISS | |
| UniRef100_B9RBW5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Triose phosphate/phosphate translocator, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RBW5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K0J8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0J8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g04140 not represented in the dataset |
Glyma05g04140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g14610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g054700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g04140.2 sequence type=transcript gene model=Glyma05g04140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAGATGATGTTATTCTTATTCTTATCCCCAATCCAATCCTACAAGTATCCCACTCAACACCACACCGACACACAACCTGAACATGTGCAGAAGTGATTCTCAAACGCCATCCATCCATCCATCTTTCCCAAAGCCAAACAAGGTGTGGTCCACCCAAAGCCTCTTCTTTTATTATCATTCTTATTTGTCCATCCAACGGCCCCAAATCCCCCCACCCCTAGCAAATCTGATCAGCCACCGTACGATCTATAATTATTCCCCCCATTTCTTCCTTCCCAGCAGCTCTTATCACTCTCCCTAACACCACCATCCCCAACTCCACTTCAGATCTGGCACCATCACCCCAAACCTAAAAAACAAAACATCATCGTACTATTTCCCATTTGGCGGCGCGGCGATGGTGGAGGCGCAGACATGGACGACGCGGCGAATGAGCAACCCTCGGCTGGACACCAGCACGACGGACCAAGTACTGGACATTCCCCCCACACCCCCGGGGGAGCTCCGCAACAGCTTCGGATCGAACCCTAACAACCTCTCCCCGACCCTGTTAACTGCTCTCATCATTTCATCTTGGTACCTCTCGAACATCGGAGTTCTTCTCTTAAACAAGTACCTCCTCAGCTTCTACGGCTACCGCTTCCCTATCTTCCTCACAATGCTCCACATGCTATCATGCGCCGCTTATTCCTACGCCTCCATCAACTTCCTTGAACTCGTTCCTCTCCAGCACATCCACTCCAAGAAGCAGTTCCTCAAGATCTTCGCTCTCAGCGCCATCTTCTGCTTCTCCGTCGTCTGCGGCAACACCTCCCTCCGCTACCTCCCCGTCTCCTTCAACCAGGCCATCGGCGCAACGACCCCGTTCTTCACCGCGATTTTTGCGTTTTTGATCACATGCAAGAAGGAGACTGGGGAGGTTTACCTCGCCCTGTTGCCGGTGGTGTTCGGTATCGTCGTGGCGAGCAACAGTGAACCCCTTTTTCATTTGTTTGGGTTTCTGGTCTGTGTCGGTTCCACCGCTGGTCGCGCTTTGAAGTCTGTGGTTCAGGGGATTTTGTTGACTTCTGAAGCGGAGAAGCTTCACTCCATGAACTTGCTTCTCTACATGGCACCCTTGGCGGCGATGATTTTGTTGCCGTTCACGCTCTACATTGAAGGAAATGTGCTGGCTTTGACTATTGAGAAGGCGAAAGCACACGAGTGCTTTGACGCTGCAGGTGTTGGGGAATGCCAAGGCGGCGGTGGCGGCGGTGGTTTCGGTTTTGATCTTCAGGAATCCGGTGACGGTTATGGGAATGGCCGGGTTCGGAATCACCATAATGGGGGTGGTGCTTTACAGTGAGGCCAAGAAGAGGTCCAAAGTTACGACTCATTGATTCATTCGCACGCACGCCGTTTTGGTTTCTTTTTTGGCTTTTATCATAACACCTTATTCTTCGGGTATTTTTCTTTCTTTCTTTGTTTTTATTGATATTGCACAATTTAGTTTGATTTAATTTTATCATTATATTTCCGTGGAATTGGGTCGAATTAATTACAGCAATTGGACTGTATAGGAAGGAAGGAAGGAGAAGCAGAAAATGGGGTGGGAGTGGGAGGGATTATTATTACTTGGTGTTGTTGTTGGGTTTCTGTTGGCCGTTGTGTAAGCTTATATATGAAACGCTCTATGCCCTTTGGCAACATACATAAAAACGTTCAAAGAACGAAAAACCTTATGTGTATTTGGCTAGGGAGGAAAATTCTCCCTCCCTGCATTTTGTTGATCACATCATCATCCATTTTTTTTTGGCTTTTTTGTCATTCGGTGTTTTGTTAGCTTTAATTTTGATTCGTTTGTGAGGTTCGAGCTAATTGATTGTATCTAGGGCTGAACTCCTCAATCAAACTGCTTCATAATAATTCACTGATGGAGTAATATTAAGAATTCAAACATGGGATTTGATTGTGTTTATTTGTCTGTATTAAGGTATTTTACTTTCTTTTGTATTGCTTTGAATTTCATTGAAATTATCACTAAACTCAAGCTTCCAACATCACATATATATAGTCATTTCACTTATGCAGTGGCTACTATATTTACTTTTAAAATAATTGTGAAGCAGGAAGGAGTACCCTGAAATCAGTCTTAGTAAATAGCTTAGTTAATATTCAGACTTGCGAGTATTGATCAAAATTTTGCAAGTCACGAATGATCAGTTTAAGATACTTTTGGAAGTTTACATTTCAAGGCCACTTGTTCTGAATGTATTAGTATCTACAGAAACTTGATGGACTTAGCCAAGTTTAGTGAAAATTATTTCATGCTTTCAGCACAAAACTTGTTACACCTGAGCTGGATTTTGTTTCTCTTCTTATAGAACCATTATTAAGTAGAATTCATTTTCTACAATTAAATTAAATTGTGCATTGCTTGGTTCCAAATGTATGAGTTAGTATCAAACTATCAATTGAGTTGATATTGGGAACTATATTTCTTGGCTTTCTTATGGTGTATATTAATATCTAGGTATGTTACCATAATAGTATCATTTTATGCTTAATTTAGCTATGGTGACAAGTCTCAATGTTTATTCCCATATTCATTCATATGGGAATGATATTAAGACTTGTCACCACAACTAAATGAGCTTAAAATGTCCATGGGGTCTAGTTCAGTTGGTTGAGCAAAATACATGAGTTATTGTAAACCTCTTGAAATTGTCTTCGGTTCCTATGAATAATTTTTTTTTTCCATATTCATTCCTTTCAAATATGTTGTGACAATCAAGATATTTCAATAAATTTTCACTATGGTCTCATAGCACCAAAATTTCAATAAATCTAGTTCTCTATGGTCTCATGCTATCTAATGCACAATATCCATTCAAAGAGATACAGGAAGTCAGTAACAATGCCTCTTCCCTGCCTAAATTTGTACCCGATTGTGCAAGTTTATGTTTTGCTTGCCTTGCTAGGTCAAAGGGTATCTTGGCTGCTAAATTAAGTGAACAGTGGCATCTCTGCAAAGACTGTCATGTTTCACACTCACCACCAGTCACTTGTGTCCTAAACTATGGTTTTAAGTTTCAAGGTGGTTACAGTTCAACAACACCCACCATTCAAAACATTGAAAAATGGCATTCCTTGCATCCATTTGGCCTAATCTCGGAAATTGGTTGCTGTTATGCTATCTTCGTCAAGCTAGTTGAAAGTTGCATTGTGTCTTTCTGAATATAGATATTTAAGATACTTGGTTTGTTAAATTTCCATTCTTGTCAAAGGGCTAGGGAGATGTCCTTGTTTGAAGCCGGTCAAATTGCTATTTAAGTATTTGCTTGGGTCATTTGGAAGTTGCTAATGGCACAATCTATGCAGCTTAATAAATTATCATTCATAAATTGTTTTAGGACTATTATATGGACTTGACTTGTGTACTTGGTCTATGTTAGGTGTGTA
>Glyma05g04140.1 sequence type=CDS gene model=Glyma05g04140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGAGGCGCAGACATGGACGACGCGGCGAATGAGCAACCCTCGGCTGGACACCAGCACGACGGACCAAGTACTGGACATTCCCCCCACACCCCCGGGGGAGCTCCGCAACAGCTTCGGATCGAACCCTAACAACCTCTCCCCGACCCTGTTAACTGCTCTCATCATTTCATCTTGGTACCTCTCGAACATCGGAGTTCTTCTCTTAAACAAGTACCTCCTCAGCTTCTACGGCTACCGCTTCCCTATCTTCCTCACAATGCTCCACATGCTATCATGCGCCGCTTATTCCTACGCCTCCATCAACTTCCTTGAACTCGTTCCTCTCCAGCACATCCACTCCAAGAAGCAGTTCCTCAAGATCTTCGCTCTCAGCGCCATCTTCTGCTTCTCCGTCGTCTGCGGCAACACCTCCCTCCGCTACCTCCCCGTCTCCTTCAACCAGGCCATCGGCGCAACGACCCCGTTCTTCACCGCGATTTTTGCGTTTTTGATCACATGCAAGAAGGAGACTGGGGAGGTTTACCTCGCCCTGTTGCCGGTGGTGTTCGGTATCGTCGTGGCGAGCAACAGTGAACCCCTTTTTCATTTGTTTGGGTTTCTGGTCTGTGTCGGTTCCACCGCTGGTCGCGCTTTGAAGTCTGTGGTTCAGGGGATTTTGTTGACTTCTGAAGCGGAGAAGCTTCACTCCATGAACTTGCTTCTCTACATGGCACCCTTGGCGGCGATGATTTTGTTGCCGTTCACGCTCTACATTGAAGGAAATGTGCTGGCTTTGACTATTGAGAAGGCGAAAGGTGACCCCTTTATTGTGTTCTTGCTGCTTGGGAATGCCACCGTGGCTTATTTGGTGAACTTGACGAATTTCTTGGTGACGAAGCACACGAGTGCTTTGACGCTGCAGGTGTTGGGGAATGCCAAGGCGGCGGTGGCGGCGGTGGTTTCGGTTTTGATCTTCAGGAATCCGGTGACGGTTATGGGAATGGCCGGGTTCGGAATCACCATAATGGGGGTGGTGCTTTACAGTGAGGCCAAGAAGAGGTCCAAAGTTACGACTCATTGA >Glyma05g04140.2 sequence type=CDS gene model=Glyma05g04140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGAGGCGCAGACATGGACGACGCGGCGAATGAGCAACCCTCGGCTGGACACCAGCACGACGGACCAAGTACTGGACATTCCCCCCACACCCCCGGGGGAGCTCCGCAACAGCTTCGGATCGAACCCTAACAACCTCTCCCCGACCCTGTTAACTGCTCTCATCATTTCATCTTGGTACCTCTCGAACATCGGAGTTCTTCTCTTAAACAAGTACCTCCTCAGCTTCTACGGCTACCGCTTCCCTATCTTCCTCACAATGCTCCACATGCTATCATGCGCCGCTTATTCCTACGCCTCCATCAACTTCCTTGAACTCGTTCCTCTCCAGCACATCCACTCCAAGAAGCAGTTCCTCAAGATCTTCGCTCTCAGCGCCATCTTCTGCTTCTCCGTCGTCTGCGGCAACACCTCCCTCCGCTACCTCCCCGTCTCCTTCAACCAGGCCATCGGCGCAACGACCCCGTTCTTCACCGCGATTTTTGCGTTTTTGATCACATGCAAGAAGGAGACTGGGGAGGTTTACCTCGCCCTGTTGCCGGTGGTGTTCGGTATCGTCGTGGCGAGCAACAGTGAACCCCTTTTTCATTTGTTTGGGTTTCTGGTCTGTGTCGGTTCCACCGCTGGTCGCGCTTTGAAGTCTGTGGTTCAGGGGATTTTGTTGACTTCTGAAGCGGAGAAGCTTCACTCCATGAACTTGCTTCTCTACATGGCACCCTTGGCGGCGATGATTTTGTTGCCGTTCACGCTCTACATTGAAGGAAATGTGCTGGCTTTGACTATTGAGAAGGCGAAAGCACACGAGTGCTTTGACGCTGCAGGTGTTGGGGAATGCCAAGGCGGCGGTGGCGGCGGTGGTTTCGGTTTTGATCTTCAGGAATCCGGTGACGGTTATGGGAATGGCCGGGTTCGGAATCACCATAATGGGGGTGGTGCTTTACAGTGA
>Glyma05g04140.1 sequence type=predicted peptide gene model=Glyma05g04140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEAQTWTTRRMSNPRLDTSTTDQVLDIPPTPPGELRNSFGSNPNNLSPTLLTALIISSWYLSNIGVLLLNKYLLSFYGYRFPIFLTMLHMLSCAAYSYASINFLELVPLQHIHSKKQFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKETGEVYLALLPVVFGIVVASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPLAAMILLPFTLYIEGNVLALTIEKAKGDPFIVFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFGITIMGVVLYSEAKKRSKVTTH* >Glyma05g04140.2 sequence type=predicted peptide gene model=Glyma05g04140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEAQTWTTRRMSNPRLDTSTTDQVLDIPPTPPGELRNSFGSNPNNLSPTLLTALIISSWYLSNIGVLLLNKYLLSFYGYRFPIFLTMLHMLSCAAYSYASINFLELVPLQHIHSKKQFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKETGEVYLALLPVVFGIVVASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPLAAMILLPFTLYIEGNVLALTIEKAKAHECFDAAGVGECQGGGGGGGFGFDLQESGDGYGNGRVRNHHNGGGALQ*
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