SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G45340 | AT | Annotation by Michelle Graham. TAIR10: cytochrome P450, family 707, subfamily A, polypeptide 3 | chr5:18368977-18370909 REVERSE LENGTH=463 | SoyBase | E_val: 4.00E-132 | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009639 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red or far red light | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0046345 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid catabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0010295 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: (+)-abscisic acid 8'-hydroxylase activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0019825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG0157 | KOG | Cytochrome P450 CYP4/CYP19/CYP26 subfamilies | JGI | ISS | |
| PTHR24286 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24286:SF63 | Panther | JGI | ISS | ||
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_I1K0G8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K0G8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q0H212 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Abscisic acid 8'-hydroxylase n=1 Tax=Phaseolus vulgaris RepID=Q0H212_PHAVU | SoyBase | E_val: 1.00E-162 | ISS |
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Glyma05g03800 not represented in the dataset |
Glyma05g03800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g14310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g051900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g03800.2 sequence type=CDS gene model=Glyma05g03800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCAAGTCACACATTTTGGGTTATCCTTGTGTGATAATTTTTAACTCGGAAGAAGCAATGTTTGTATTGAACAAAGATCAACTCTTCAAACCAACATTTTCTGCTAGCAAAGAGAGGATGTTGGGGAAGCAAGCGATTTTCTTTCACCAAAGAGCATACCATGCTAACCTCAGAATGCTTGTCCTTCGAACCATCATGCCTGAGGCTATTAAAGACATAATCTCTGAGATCGAATCCATTGCCCAAAGTTGCCTCAAATCATGGGAAGGAAAATATTCTATCCTTAATGCATGCACTTCGCACACAAGGAGAGCAAGGAAAGAGCTTGCACAGATCTTGGCTCAAATAATCTCGACAAGGAGGAACATGAAGCAAGATCGCAATGACTTGTTGGGATTGTTCATGAGTGAAAAAGCAGGACCCACTGATGAGCAAATAATAGATAACATCATTGGTGTCATTTTTGCAGCTCGTGACACAGCTGCCACTGTACTTACGTGGATTGTTAAGTACCTTGGTGAAAACCCCCATATCCTAGAAGCAGTAACAGAGTCCATAATAAGGGGCAAGGAAGAAAATGGAGAACAAATCGGTCTAAATTGGTCAGACATAAAAAATGTGCTTATGACATCCAGGGTCATACAGGAGACTCTAAGAATAGCATCAATTTTGTCTTTTACTTCCAGAGAAGCTATAGAGGATGTTGAAATCCAAGGGTATCTCATACCAGAAGGGTGGAAAGTATTACCACTTTTTAGAAACATCCACCATAGGCCTGACAACTTCAAAGAGCCAGAGAAGTTTGATCCTTCAAGATTTGAGGTAATTATTGTGCAGTTCCTCCAAAACCCAATACCTTTATGCATTTGGCAATGGGATCCATGGATGTCCGGCAATGAATTAGCCATGTTGGAGATTTTGGTGCTTCTACATCACCTGACCAGAAAGTGCAGATGGTCTATAATAGGTGCAAAAAAGAAGAATCAATATGACCCTTTTGCCCTTCCACAAAATGGGTTGCCCGTCACATTATATCCCAAGAAATAA
>Glyma05g03800.2 sequence type=predicted peptide gene model=Glyma05g03800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFKSHILGYPCVIIFNSEEAMFVLNKDQLFKPTFSASKERMLGKQAIFFHQRAYHANLRMLVLRTIMPEAIKDIISEIESIAQSCLKSWEGKYSILNACTSHTRRARKELAQILAQIISTRRNMKQDRNDLLGLFMSEKAGPTDEQIIDNIIGVIFAARDTAATVLTWIVKYLGENPHILEAVTESIIRGKEENGEQIGLNWSDIKNVLMTSRVIQETLRIASILSFTSREAIEDVEIQGYLIPEGWKVLPLFRNIHHRPDNFKEPEKFDPSRFEVIIVQFLQNPIPLCIWQWDPWMSGNELAMLEILVLLHHLTRKCRWSIIGAKKKNQYDPFALPQNGLPVTLYPKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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