Glyma05g03770 - SoyBase

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Report for Sequence Feature Glyma05g03770

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2918810
stop:	2923984
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22670	AT	Annotation by Michelle Graham. TAIR10: HSP70-interacting protein 1 \| chr4:11918236-11920671 FORWARD LENGTH=441	SoyBase	E_val: 3.00E-132	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG1308	KOG	Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein	JGI		ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF34	Panther	HSC70-INTERACTING PROTEIN	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B1PDS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hsp70-interacting protein 1 n=1 Tax=Vitis labrusca RepID=B1PDS1_9ROSI	SoyBase	E_val: 3.00E-146	ISS
UniRef100_I1K0G0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0G0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g03770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g03770 not represented in the dataset	Glyma05g03770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03770

Paralog	Evidence	Comments
Glyma17g14280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g051600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g03770

Limit To All Plant Sequences

>Glyma05g03770.4   sequence type=transcript   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAGGAGAGTTGAGCTACGGTGGGCATTAATAACTAGAGTATTATTAGTATCCCCCAAACACATATCCAACCGAAGCTACTAGAAGCCCAATCCGTCACGAAAAGTCTAGACCCTGTCGTGTAACATAAAAACCACCGAAGAAAACATCACTGCGCCGCGCTGCCACACCGAACAAACACAAACATGGATGCATCCAAACTCAATCAATTGAAGCATTTCATCGAACAGTGCAAGTCCAACCCTTCCCTCCTCTCCGATCCTTCACTCTCCTTCTTCCGCGACTATCTCGAAAGTCTCGGGGCGAAACTCCCTGAATCTGCTTATTCCGAATCGACGGGCGTGGAGAGCGATGAGGACATAGAAGATGTTACGGAGGAGCAAGAGAAGGTAGAAGAAGAAGAAGAAGATGATGAAATAATTGAATCCGATGTTGAGCTCGAGGGTGAAACCTGTCAGTCTGATGATGATCCTCCACAGAAGATGGGAGACCCCTCTGTCGAGGTCACTGAAGAGAATCGCGACGCTTCGCAGATGGCCAAAATTAAAGCCATGGATGCTATTTCTGAAGGTAAGTTGGAGGAGGCGATTGAGAACTTAACAGAAGCTATTTTACTCAATCCTACCTCTGCCATAATGTATGGAACTAGAGCCAGTGTTTACATCAAAATGAAGAAACCCAATGCTGCGATCCGTGATGCTAATGCTGCTTTGGAGATTAATCCTGATTCTGCTAAAGGATACAAGTCACGTGGCGTAGCACGAGCAATGCTTGGTCAATGGGAAGAAGCTGCAAAGGATCTTCATGTGGCTTCAAAGTTAGACTATGATGAGGAAATAAATGCTGTACTTAAAAAGGTGGAACCAAATGCTCACAAGATTGAGGAACACCGTCGGAAGTATGAAAGGCTGCACAAAGAAAGAGAGGATAAAAAAAAGGAGCGTGAGAGGCAGCGGCGCCGTGCTGAAGCTCAGGCTGCCTATGAGAAGGCCAAGAAGCAAGAGCAATCATCTTCCAGTAGAAATCCTGGAGGTATGCCTGGTGGGTTTCCTGGTGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGTATGCCGGGAGGCTTCCCAGGGGCCGGGGGTATGCCTGGGGGAGGCTTCCCAGGAGCTGGTGGCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAGGTCCTGTAATTGCGAAAATGATGACCAAACTTGGAGGTGGTCCCAAGTGAATACTTTTAGATGCTTATAAGTTATATGAGACTTCAACATTCCAGCCCTCTGGCATCGGGAAAAATGAAATAATAGTTTCTTAGCTTTGTCCAGTGATTCCTGTAGAAGTCTGGTTTATGACTGGCAGTGGTTTGAACGCACTTAATTACTAGCACCATAATTATAGATAAAGGTGTTCGTAGATTAGATTACATCAGTTAAGGAGAGAAAATTTGTTTGATCCAATCGGTTGATTTAAAATTTCATCAGATCTTATGCGATCCAATAAATTTTCG

>Glyma05g03770.5   sequence type=transcript   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAGGAGAGTTGAGCTACGGTGGGCATTAATAACTAGAGTATTATTAGTATCCCCCAAACACATATCCAACCGAAGCTACTAGAAGCCCAATCCGTCACGAAAAGTCTAGACCCTGTCGTGTAACATAAAAACCACCGAAGAAAACATCACTGCGCCGCGCTGCCACACCGAACAAACACAAACATGGATGCATCCAAACTCAATCAATTGAAGCATTTCATCGAACAGTGCAAGTCCAACCCTTCCCTCCTCTCCGATCCTTCACTCTCCTTCTTCCGCGACTATCTCGAAAGTCTCGGGGCGAAACTCCCTGAATCTGCTTATTCCGAATCGACGGGCGTGGAGAGCGATGAGGACATAGAAGATGTTACGGAGGAGCAAGAGAAGGTAGAAGAAGAAGAAGAAGATGATGAAATAATTGAATCCGATGTTGAGCTCGAGGGTGAAACCTGTCAGTCTGATGATGATCCTCCACAGAAGATGGGAGACCCCTCTGTCGAGGTCACTGAAGAGAATCGCGACGCTTCGCAGATGGCCAAAATTAAAGCCATGGATGCTATTTCTGAAGGTAAGTTGGAGGAGGCGATTGAGAACTTAACAGAAGCTATTTTACTCAATCCTACCTCTGCCATAATGTATGGAACTAGAGCCAGTGTTTACATCAAAATGAAGAAACCCAATGCTGCGATCCGTGATGCTAATGCTGCTTTGGAGATTAATCCTGATTCTGCTAAAGGATACAAGTCACGTGGCGTAGCACGAGCAATGCTTGGTCAATGGGAAGAAGCTGCAAAGGATCTTCATGTGGCTTCAAAGTTAGACTATGATGAGGAAATAAATGCTGTACTTAAAAAGGTGGAACCAAATGCTCACAAGATTGAGGAACACCGTCGGAAGTATGAAAGGCTGCACAAAGAAAGAGAGGATAAAAAAAAGGAGCGTGAGAGGCAGCGGCGCCGTGCTGAAGCTCAGGCTGCCTATGAGAAGGCCAAGAAGCAAGAGCAATCATCTTCCAGTAGAAATCCTGGAGGTATGCCTGGTGGGTTTCCTGGTGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGTATGCCGGGAGGCTTCCCAGGGGCCGGGGGTATGCCTGGGGGAGGCTTCCCAGGAGCTGGTGGCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAGGTCCTGTAATTGCGAAAATGATGACCAAACTTGGAGGTGGTCCCAAGTGAATACTTTTAGATGCTTATAAGTTATATGAGACTTCAACATTCCAGCCCTCTGGCATCGGGTATTTAATGTTTATTGCATTTTTAATTTTAACGAAATTATTTAACTTTTTACCATTTGTTAGTCCTGTTTCTTAGGTGCCCTATTATAGCTCGTGCTGGTAGCCATGTTTATTTGTGAACAATGTAATGTTATTTTCCCGAGTGAATTTGAATGTTTAAAGTTGATATTTTTTGCATTTCAGGAAAAATGAAATAATAGTTTCTTAGCTTTGTCCAGTGATTCCTGTAGAAGTCTGGTTTATGACTGGCAGTGGTTTGAACGCACTTAATTACTAGCACCATAATTATAGATAAAGGTGTTCGTAGATTAGATTACATCAGTTAAGGAGAGAAAATTTGTTTGATCCAATCGGTTGATTTAAAATTTCATCAGATCTTATGCGATCCAATAAATTTTCG

Coding sequences of Glyma05g03770

Limit To All Plant Sequences

>Glyma05g03770.2   sequence type=CDS   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCATCCAAACTCAATCAATTGAAGCATTTCATCGAACAGTGCAAGTCCAACCCTTCCCTCCTCTCCGATCCTTCACTCTCCTTCTTCCGCGACTATCTCGAAAGTCTCGGGGCGAAACTCCCTGAATCTGCTTATTCCGAATCGACGGGCGTGGAGAGCGATGAGGACATAGAAGATGTTACGGAGGAGCAAGAGAAGGTAGAAGAAGAAGAAGAAGATGATGAAATAATTGAATCCGATGTTGAGCTCGAGGGTGAAACCTGTCAGTCTGATGATGATCCTCCACAGAAGATGGGAGACCCCTCTGTCGAGGTCACTGAAGAGAATCGCGACGCTTCGCAGATGGCCAAAATTAAAGCCATGGATGCTATTTCTGAAGGTAAGTTGGAGGAGGCGATTGAGAACTTAACAGAAGCTATTTTACTCAATCCTACCTCTGCCATAATGTATGGAACTAGAGCCAGTGTTTACATCAAAATGAAGAAACCCAATGCTGCGATCCGTGATGCTAATGCTGCTTTGGAGATTAATCCTGATTCTGCTAAAGGATACAAGTCACGTGGCGTAGCACGAGCAATGCTTGGTCAATGGGAAGAAGCTGCAAAGGATCTTCATGTGGCTTCAAAGTTAGACTATGATGAGGAAATAAATGCTGTACTTAAAAAGGTGGAACCAAATGCTCACAAGATTGAGGAACACCGTCGGAAGTATGAAAGGCTGCACAAAGAAAGAGAGGATAAAAAAAAGGAGCGTGAGAGGCAGCGGCGCCGTGCTGAAGCTCAGGCTGCCTATGAGAAGGCCAAGAAGCAAGAGCAATCATCTTCCAGTAGAAATCCTGGAGGTATGCCTGGTGGGTTTCCTGGTGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGTATGCCGGGAGGCTTCCCAGGGGCCGGGGGTATGCCTGGGGGAGGCTTCCCAGGAGCTGGTGGCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGGTAATTATCAGTTCTAA

>Glyma05g03770.4   sequence type=CDS   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCATCCAAACTCAATCAATTGAAGCATTTCATCGAACAGTGCAAGTCCAACCCTTCCCTCCTCTCCGATCCTTCACTCTCCTTCTTCCGCGACTATCTCGAAAGTCTCGGGGCGAAACTCCCTGAATCTGCTTATTCCGAATCGACGGGCGTGGAGAGCGATGAGGACATAGAAGATGTTACGGAGGAGCAAGAGAAGGTAGAAGAAGAAGAAGAAGATGATGAAATAATTGAATCCGATGTTGAGCTCGAGGGTGAAACCTGTCAGTCTGATGATGATCCTCCACAGAAGATGGGAGACCCCTCTGTCGAGGTCACTGAAGAGAATCGCGACGCTTCGCAGATGGCCAAAATTAAAGCCATGGATGCTATTTCTGAAGGTAAGTTGGAGGAGGCGATTGAGAACTTAACAGAAGCTATTTTACTCAATCCTACCTCTGCCATAATGTATGGAACTAGAGCCAGTGTTTACATCAAAATGAAGAAACCCAATGCTGCGATCCGTGATGCTAATGCTGCTTTGGAGATTAATCCTGATTCTGCTAAAGGATACAAGTCACGTGGCGTAGCACGAGCAATGCTTGGTCAATGGGAAGAAGCTGCAAAGGATCTTCATGTGGCTTCAAAGTTAGACTATGATGAGGAAATAAATGCTGTACTTAAAAAGGTGGAACCAAATGCTCACAAGATTGAGGAACACCGTCGGAAGTATGAAAGGCTGCACAAAGAAAGAGAGGATAAAAAAAAGGAGCGTGAGAGGCAGCGGCGCCGTGCTGAAGCTCAGGCTGCCTATGAGAAGGCCAAGAAGCAAGAGCAATCATCTTCCAGTAGAAATCCTGGAGGTATGCCTGGTGGGTTTCCTGGTGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGTATGCCGGGAGGCTTCCCAGGGGCCGGGGGTATGCCTGGGGGAGGCTTCCCAGGAGCTGGTGGCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAGGTCCTGTAATTGCGAAAATGATGACCAAACTTGGAGGTGGTCCCAAGTGA

>Glyma05g03770.5   sequence type=CDS   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCATCCAAACTCAATCAATTGAAGCATTTCATCGAACAGTGCAAGTCCAACCCTTCCCTCCTCTCCGATCCTTCACTCTCCTTCTTCCGCGACTATCTCGAAAGTCTCGGGGCGAAACTCCCTGAATCTGCTTATTCCGAATCGACGGGCGTGGAGAGCGATGAGGACATAGAAGATGTTACGGAGGAGCAAGAGAAGGTAGAAGAAGAAGAAGAAGATGATGAAATAATTGAATCCGATGTTGAGCTCGAGGGTGAAACCTGTCAGTCTGATGATGATCCTCCACAGAAGATGGGAGACCCCTCTGTCGAGGTCACTGAAGAGAATCGCGACGCTTCGCAGATGGCCAAAATTAAAGCCATGGATGCTATTTCTGAAGGTAAGTTGGAGGAGGCGATTGAGAACTTAACAGAAGCTATTTTACTCAATCCTACCTCTGCCATAATGTATGGAACTAGAGCCAGTGTTTACATCAAAATGAAGAAACCCAATGCTGCGATCCGTGATGCTAATGCTGCTTTGGAGATTAATCCTGATTCTGCTAAAGGATACAAGTCACGTGGCGTAGCACGAGCAATGCTTGGTCAATGGGAAGAAGCTGCAAAGGATCTTCATGTGGCTTCAAAGTTAGACTATGATGAGGAAATAAATGCTGTACTTAAAAAGGTGGAACCAAATGCTCACAAGATTGAGGAACACCGTCGGAAGTATGAAAGGCTGCACAAAGAAAGAGAGGATAAAAAAAAGGAGCGTGAGAGGCAGCGGCGCCGTGCTGAAGCTCAGGCTGCCTATGAGAAGGCCAAGAAGCAAGAGCAATCATCTTCCAGTAGAAATCCTGGAGGTATGCCTGGTGGGTTTCCTGGTGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGCATGCCTGGGGGCTTCCCAGGGGCCGGGGGTATGCCGGGAGGCTTCCCAGGGGCCGGGGGTATGCCTGGGGGAGGCTTCCCAGGAGCTGGTGGCATGCCTGGAGGGGTGCCTGGAAACATTGATTTTAGCAAAATCTTGAGTGACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAGGTCCTGTAATTGCGAAAATGATGACCAAACTTGGAGGTGGTCCCAAGTGA

Predicted protein sequences of Glyma05g03770

Limit To All Plant Sequences

>Glyma05g03770.2   sequence type=predicted peptide   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDASKLNQLKHFIEQCKSNPSLLSDPSLSFFRDYLESLGAKLPESAYSESTGVESDEDIEDVTEEQEKVEEEEEDDEIIESDVELEGETCQSDDDPPQKMGDPSVEVTEENRDASQMAKIKAMDAISEGKLEEAIENLTEAILLNPTSAIMYGTRASVYIKMKKPNAAIRDANAALEINPDSAKGYKSRGVARAMLGQWEEAAKDLHVASKLDYDEEINAVLKKVEPNAHKIEEHRRKYERLHKEREDKKKERERQRRRAEAQAAYEKAKKQEQSSSSRNPGGMPGGFPGGMPGGFPGAGGMPGGFPGAGGMPGGFPGAGGMPGGGFPGAGGMPGGVPGNIDFSKILSDPELMAAFSDPEVMAALQDGNYQF*

>Glyma05g03770.4   sequence type=predicted peptide   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDASKLNQLKHFIEQCKSNPSLLSDPSLSFFRDYLESLGAKLPESAYSESTGVESDEDIEDVTEEQEKVEEEEEDDEIIESDVELEGETCQSDDDPPQKMGDPSVEVTEENRDASQMAKIKAMDAISEGKLEEAIENLTEAILLNPTSAIMYGTRASVYIKMKKPNAAIRDANAALEINPDSAKGYKSRGVARAMLGQWEEAAKDLHVASKLDYDEEINAVLKKVEPNAHKIEEHRRKYERLHKEREDKKKERERQRRRAEAQAAYEKAKKQEQSSSSRNPGGMPGGFPGGMPGGFPGAGGMPGGFPGAGGMPGGFPGAGGMPGGGFPGAGGMPGGVPGNIDFSKILSDPELMAAFSDPEVMAALQDVMKNPANFAKHQSNPKVGPVIAKMMTKLGGGPK*

>Glyma05g03770.5   sequence type=predicted peptide   gene model=Glyma05g03770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDASKLNQLKHFIEQCKSNPSLLSDPSLSFFRDYLESLGAKLPESAYSESTGVESDEDIEDVTEEQEKVEEEEEDDEIIESDVELEGETCQSDDDPPQKMGDPSVEVTEENRDASQMAKIKAMDAISEGKLEEAIENLTEAILLNPTSAIMYGTRASVYIKMKKPNAAIRDANAALEINPDSAKGYKSRGVARAMLGQWEEAAKDLHVASKLDYDEEINAVLKKVEPNAHKIEEHRRKYERLHKEREDKKKERERQRRRAEAQAAYEKAKKQEQSSSSRNPGGMPGGFPGGMPGGFPGAGGMPGGFPGAGGMPGGFPGAGGMPGGGFPGAGGMPGGVPGNIDFSKILSDPELMAAFSDPEVMAALQDVMKNPANFAKHQSNPKVGPVIAKMMTKLGGGPK*

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