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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52060 | AT | Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 1 | chr5:21152449-21153741 REVERSE LENGTH=342 | SoyBase | E_val: 3.00E-68 | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| KOG4361 | KOG | BCL2-associated athanogene-like proteins and related BAG family chaperone regulators | JGI | ISS | |
| PTHR12329 | Panther | BCL2-ASSOCIATED ATHANOGENE | JGI | ISS | |
| PTHR12329:SF8 | Panther | OS09G0524800 PROTEIN | JGI | ISS | |
| PF02179 | PFAM | BAG domain | JGI | ISS | |
| UniRef100_B9R9G5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R9G5_RICCO | SoyBase | E_val: 3.00E-77 | ISS |
| UniRef100_I1K0D4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0D4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g03520 not represented in the dataset |
Glyma05g03520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g14080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g049600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g03520.4 sequence type=transcript gene model=Glyma05g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAATATCTTGTTCAACCTTTTTATTGCGAAAACAGTTGAACACAATAAATTTGACGAATGAAGACAGTGTAGTAATCCGGGGTGAAACCTCCGTTTTGGCTCACCAACCACAGATTTCCCTTCTCTGTCTCTTCCTGCGCGTTACCAAATTTGATTTTACCTTTTTCTCTCTTTATATTCTTCTCTTCAAATTCTGACACTTTCTGCGCCGGCCACTCAGTTTCTCTTTCGTTTTTCTTTTTCTTTTCTCCTTTTCTTCTTCTTTCACTTATCCTATTAGTATTTCCCTCAGTCGGTTTATTCATTCTCTCTGTTTTTTTCCTTCCACCGACTGCTAGTTTTCGTTTACACCACTAACTTCAAGAAGAGGCTTTTGGGCAAGTCAAGGTTCTTTCTTCTTTCCTCGGTTCCCTTCCCTCCAAGGGAAGAACCTCTTTAGATACCCTTTTTGCTCTGAGAACACATACGACCACACTCTCTTCCATTTCATCCATAAAACTTGGAGTGCAGTCAAAGAGTCAAAGATTCACAACATGTTTCCGAGGGGCAGAAGGAGTGACATTGGTGGCCATGGCAACACAAACGTGGCTGAATGGGAATTACGGCCAGGAGGAATGCTCGTGCAGAAACGTAACTTGGATTTGAATCAAAATTCTGCATCTAAATCTACCATCAAAGTCAAAGTGAAGTATGGCTCATCCTATCACCAAATTCAAATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTAACAGAACCTACAGGATTGCACATTCAGGATCAGAAATTGATTTACAAGAAAAAAGAGAGGGATTCAAAGTCATATCTTGATGTCGAGAGGGTCAAAGATGGATCAAAATTGGTGCTGCTTGTGGACATTGAGAGTAGAGAAAGAAGGATACTTGAGACGTTAAAAATTGCTAAGAAGGAGAAGACATTAAAATCCTTGACAGAAATAAAGGTGGAGGTTGATAAACTTGCCAAGAAGGTAGCAGCTTTGGAAGCTGCTACTTCCACAGGTGGGGTTATAGCAGAGTTAGATATAGAGACTTTGACAGAGAATTTGATGAGAACATTGATTGCATTGGATGAAATTTATGGTGAGGGTGAACTGAAATTGCAGAGAAGAGAGCAGATTAGGAGAGTTCAGAAACACATTGAGACTCTAGATATGTTGAGGATGGCAAGGGAAAACTCAATTTCTCTGAAAAATGAAGAAAAAAACATGGCACGTGAGAGCAAGGTGCATTGTGGTGGTCACATGCAGGGGAGACAGGGAAATCCTAAGAAGCAGCAACCGTTAAAACATCCTGACTCGGTTGTAGTCACAACAAAATGGGAAACTTTTGATTGAGGCTTTTAGATTTGCAACGAAAATGCCTCACACACCTTAAGAGTGCAATATTCAGTGAGTCATCTAGTTGTGGGTTGCTTCTGCCATAAAAGAAATTATTATTTTTCTCATTATATATCTGCAAATTAGAATAATGTTTGGTTCACATTATTTTTGCTTTACATCTACTTGCACCCTTTAAAGCATAGAATCATTTCATAGGACGAATAGCAAAGGTAAAAAGCTGTTTAATAGTAGTTGTAAAAGTATGTGGAATAAAAACTGACTTGAAAAACCAAGAGGCTAGTTACTTCAGCAATGGGTAATTCGTGTTTCATTCTCTTTTATTTGTTTTGAATTATATCATTCACAGAAATTTTTCTTCCAATTTTTTACATTATTATAATTATTTTCTTTATTTCTTTCATAATAGTAATTATCTTATTACATGTTGTTTTCCTTCTCTTCCTATTTGTTGT
>Glyma05g03520.3 sequence type=CDS gene model=Glyma05g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTCCGAGGGGCAGAAGGAGTGACATTGGTGGCCATGGCAACACAAACGTGGCTGAATGGGAATTACGGCCAGGAGGAATGCTCGTGCAGAAACGTAACTTGGATTTGAATCAAAATTCTGCATCTAAATCTACCATCAAAGTCAAAGTGAAGTATGGCTCATCCTATCACCAAATTCAAATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTAACAGAACCTACAGGATTGCACATTCAGGATCAGAAATTGATTTACAAGAAAAAAGAGAGGGATTCAAAGTCATATCTTGATGTCGAGAGGGTCAAAGATGGATCAAAATTGGTGCTGCTTGTGGACATTGAGAGTAGAGAAAGAAGGATACTTGAGACGTTAAAAATTGCTAAGAAGGAGAAGACATTAAAATCCTTGACAGAAATAAAGGTGGAGGTTGATAAACTTGCCAAGAAGGTAGCAGCTTTGGAAGCTGCTACTTCCACAGGTGGGGTTATAGCAGAGTTAGATATAGAGACTTTGACAGAGAATTTGATGAGAACATTGATTGCATTGGATGAAATTTATGGTGAGGGTGAACTGAAATTGCAGAGAAGAGAGCAGATTAGGAGAGTTCAGAAACACATTGAGACTCTAGATATGTTGAGGATGGCAAGGGAAAACTCAATTTCTCTGAAAAATGAAGAAAAAAACATGGCACGTGAGAGCAAGGTGCATTGTGGTGGTCACATGCAGGGGAGACAGGGAAATCCTAAGAAGCAGCAACCGTTAAAACATCCTGACTCGGTTGTAGTCACAACAAAATGGGAAACTTTTGATTGA >Glyma05g03520.4 sequence type=CDS gene model=Glyma05g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTCCGAGGGGCAGAAGGAGTGACATTGGTGGCCATGGCAACACAAACGTGGCTGAATGGGAATTACGGCCAGGAGGAATGCTCGTGCAGAAACGTAACTTGGATTTGAATCAAAATTCTGCATCTAAATCTACCATCAAAGTCAAAGTGAAGTATGGCTCATCCTATCACCAAATTCAAATCAGTTCTCATGCAAGTTTTGGGGAATTGAAGAAAATGTTAACAGAACCTACAGGATTGCACATTCAGGATCAGAAATTGATTTACAAGAAAAAAGAGAGGGATTCAAAGTCATATCTTGATGTCGAGAGGGTCAAAGATGGATCAAAATTGGTGCTGCTTGTGGACATTGAGAGTAGAGAAAGAAGGATACTTGAGACGTTAAAAATTGCTAAGAAGGAGAAGACATTAAAATCCTTGACAGAAATAAAGGTGGAGGTTGATAAACTTGCCAAGAAGGTAGCAGCTTTGGAAGCTGCTACTTCCACAGGTGGGGTTATAGCAGAGTTAGATATAGAGACTTTGACAGAGAATTTGATGAGAACATTGATTGCATTGGATGAAATTTATGGTGAGGGTGAACTGAAATTGCAGAGAAGAGAGCAGATTAGGAGAGTTCAGAAACACATTGAGACTCTAGATATGTTGAGGATGGCAAGGGAAAACTCAATTTCTCTGAAAAATGAAGAAAAAAACATGGCACGTGAGAGCAAGGTGCATTGTGGTGGTCACATGCAGGGGAGACAGGGAAATCCTAAGAAGCAGCAACCGTTAAAACATCCTGACTCGGTTGTAGTCACAACAAAATGGGAAACTTTTGATTGA
>Glyma05g03520.3 sequence type=predicted peptide gene model=Glyma05g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFPRGRRSDIGGHGNTNVAEWELRPGGMLVQKRNLDLNQNSASKSTIKVKVKYGSSYHQIQISSHASFGELKKMLTEPTGLHIQDQKLIYKKKERDSKSYLDVERVKDGSKLVLLVDIESRERRILETLKIAKKEKTLKSLTEIKVEVDKLAKKVAALEAATSTGGVIAELDIETLTENLMRTLIALDEIYGEGELKLQRREQIRRVQKHIETLDMLRMARENSISLKNEEKNMARESKVHCGGHMQGRQGNPKKQQPLKHPDSVVVTTKWETFD* >Glyma05g03520.4 sequence type=predicted peptide gene model=Glyma05g03520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFPRGRRSDIGGHGNTNVAEWELRPGGMLVQKRNLDLNQNSASKSTIKVKVKYGSSYHQIQISSHASFGELKKMLTEPTGLHIQDQKLIYKKKERDSKSYLDVERVKDGSKLVLLVDIESRERRILETLKIAKKEKTLKSLTEIKVEVDKLAKKVAALEAATSTGGVIAELDIETLTENLMRTLIALDEIYGEGELKLQRREQIRRVQKHIETLDMLRMARENSISLKNEEKNMARESKVHCGGHMQGRQGNPKKQQPLKHPDSVVVTTKWETFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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