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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12640 | AT | Annotation by Michelle Graham. TAIR10: MBOAT (membrane bound O-acyl transferase) family protein | chr1:4303586-4305666 REVERSE LENGTH=462 | SoyBase | E_val: 0 | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0010260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ senescence | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019432 | GO-bp | Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0045017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| GO:0071617 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lysophospholipid acyltransferase activity | SoyBase | N/A | ISS |
| KOG2704 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR13906 | Panther | PORCUPINE | JGI | ISS | |
| PTHR13906:SF4 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF03062 | PFAM | MBOAT family | JGI | ISS | |
| UniRef100_D7KP97 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane bound O-acyl transferase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KP97_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K0D2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0D2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g03510 not represented in the dataset |
Glyma05g03510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g14070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g049500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g03510.2 sequence type=transcript gene model=Glyma05g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTAAGTAAAAAAAAAATAGACGGAGTTTCCAAAGAAGACAGTACGAAAGATCCGTAAGAAGTTGAGGTCACGCAAAGGAGGATGGTATTACCGTATTAGGAATTCCAAAGTTAAGGAAAGTGATAGGTAATTTTATCAGTGATTTAGGATTTGAATTATAATTAATTTTTAGATATAGAATAAATTATGATACATGTAATTATAACATTTGAGGAAGTTTATTAAGAGGTTCAATCGAGGTGTGTTCAGTTGAAGAAGCCATAAATAAATCTTCTTAGCTTCCATCAAATCTCACACTCTCATTCTTAGAGCCATGGCCATGGATTCCATGGCCGCTTCCATCGGAGTCTCGGTCCCCGTGCTACGCTTCCTCCTCTGCTTTGCCGCCACCGTGCCCCTCAGCTTCCTCTGCCGCCTCCTCCCCCGTGGCCTCCCCAAGCACCTCTACTCCGCCGCCGTCGGCGTCGCCCTCTCCTACCTCTCCTTCGGCGTCTCCTCCAACCTCCACTTCCTCGTCCCCATGTTCCTCGGCTACGCCTCCATGCTCCTCTTTCGTCCCCGATGCGGCATCCTCACCTTCTTCCTCGGATTCGGCTACCTCATTGGCTGCCACGTGTATTACATGAGCGGTGACGCATGGAAGGAAGGTGGCATCGATGCCACTGGGGCCTTAATGGTTTTGACGCTCAAGGTTATCTCCTGTGCGGTTAATTACAACGATGGATTGCTGAAAGAGGAGGGTTTGCGTGAGGCTCAGAAGAAGTACCGTTTGATCAAATTGCCTTCCTTGATTGAGTACATTGGTTACTGCCTCTGCTGCGGGAGTCACTTTGCTGGTCCTGTTTATGAAATGAAGGATTATCTTGATTGGACTGAAGGAAAAGGGATTTGGAGCACTGAAGCAAAAGGGCCATTGCCATCACCTTATGGGGCAACCCTCCGGGCTCTTCTCCAAGCTGGTTTTTGCATGGCCATGTATTTGAACCTCGTGCCTCATTTTCCTCTGTCCAAGTTTACTGATCCTACCTACCATGAATGGTGTTTCTGGAAAAAATTAAGTTACCAGTATATGTCTGGCTTTACTGCACGTTGGAAGTATTATTTTATCTGGTCAATTTCAGAAGCTTCTATTATAATCTCTGGCCTGGGTTTCAGTGGCTGGACTGATTCGTCCCCACCGAAGCCTTGCTGGGACCGGGCCAAAAATGTAGATATAATAGGTGTTGAGTTTGCAAAGAGTGCAGTTACTATTCCAGCTGTGTGGAATATTCAAGTCAGCACCTGGCTTCGTCATTATGTTTACGAAAGGCTTATTCAGACTGGGAAGAAACCTGGTTTCATTCAGCTACTTGCCACCCAGACCGTTAGTGCTGTTTGGCATGGCTTGTACCCTGGATACATAATATTCTTTGTTCAGTCAGCATTAATGATTGCTGGTTCCAGAGGTATATGTTGAATTTTGCTCATTTGCTGTTCTTTCTTTAGTAAGTTAACTTGAGTTGCTGTGTTTCTTTTGAAACAGTCATTTACAGATGGCAGCAAGCCGTACCTCCGACGATGTCTCTGGTTAAGAATGTGTTGGTGTTTACAAATTTTGCTTATACACTTTTGGTTCTAAATTACTCCTGCGTTGGTTTCATGGTTCGTCCTTTTTCTCCCCTGCCACCCCCCGCCACCCACTGAAACACATTAACACACACACACACATTCAATATCTCTTCTCAGACTAAAAACATGCCAATATGGATTTCAAAGTTATTTTTACAAGTTTACTATATGTTTGAATAGGTGTTAAGTCTGCATGAAACCCTTGCCTCATATGGAAGCGTGTATTACATTGGAACTATTATTCCTGTTGTTCTGATTCTTCTTGCCAAAGTAATCAAACCTGGAAAGCCTGCCAGATCTAAAGCTCGGAAGGAACAGTGAGGTAGAAAATGCTGTTTATTCTTGTTGGAAATTTTGAAATCAGATTAGGAGAAAGCGAGAGAACGGGTTTCCAGTTTCCACAGGTTTTCTGCCCCTGGTTTTCAACCTTGTAACAGCTCCTTTGGTCCTGAATATGGTTGGGCGCTTTCATACTCTTGCCTTTAGCATTGAACTGTATTTCTGTGATAAGAAACATCTTGTTGGCAGGTTTGATAAAAGCAGTTATTGAAGACATGTTAGAAACATTTGTATTTCGGTGATTTCTCTCTACTTTCAGCTCTGATTCCCAACAATTACTGCAAGAGGCTCTAGTTTTCAAATGTTAACTGTAGACAAATATGCAGATACTCTGATGTATGGCAGTATAACTGTACTATCTAGTATTCATTTCTCCAAGTCACTTGTCATTTTGTACAAAAATGATACCCGCCTTGTTGGACATAAAGTATGGGCACTGTTACTAAGAAAATTTTGGATCGGAACTGCCTATCATAGGTCTTCAGAATTTTATATTTTTTCCTGAAATGTCTGGGACAGTGCTTACCCAACTGACCTAAGGATATCTAAACTCTGTAGGTTTAGAATGCCCTGAAAATCTCTTTTGCCTTAAGACTGAGATATACGATAAGGTGAGCTAGTATTCTTTTGCATGTATGGCCTCTAATTGCCTATTTCAAGTGTTTCTAGACCATGCCAATAAGAAAAAAAAGGAACAGGGAGGGAGAGCGAGAAGTCTCCATAACGTTAAGTTTGTTGAAGGTGAAATGAGATATTCAATCCAATCGAAGTACCATTCTCGTCTTAATCTATTCCTGACGTATCAGCTGGTTTCTCCGGAATTTCAGTTCTTAAAATGTCACTAATGCAAACAAATGAACATGGTGTTGGACTTATTTTATAATGATGATGGGATTCCAAGATTTCTTTTTGTGTTGGTGAATAAGATTTGCGCATCCTTATAACAAATTTCAGTATTTTTAGAGTGAAATAAGTGTTACTCATTTTTATGCAGGCATGTCTCTTATTACTTTGTGTGATATGCCTATTTTGTGATA
>Glyma05g03510.1 sequence type=CDS gene model=Glyma05g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGGATTCCATGGCCGCTTCCATCGGAGTCTCGGTCCCCGTGCTACGCTTCCTCCTCTGCTTTGCCGCCACCGTGCCCCTCAGCTTCCTCTGCCGCCTCCTCCCCCGTGGCCTCCCCAAGCACCTCTACTCCGCCGCCGTCGGCGTCGCCCTCTCCTACCTCTCCTTCGGCGTCTCCTCCAACCTCCACTTCCTCGTCCCCATGTTCCTCGGCTACGCCTCCATGCTCCTCTTTCGTCCCCGATGCGGCATCCTCACCTTCTTCCTCGGATTCGGCTACCTCATTGGCTGCCACGTGTATTACATGAGCGGTGACGCATGGAAGGAAGGTGGCATCGATGCCACTGGGGCCTTAATGGTTTTGACGCTCAAGGTTATCTCCTGTGCGGTTAATTACAACGATGGATTGCTGAAAGAGGAGGGTTTGCGTGAGGCTCAGAAGAAGTACCGTTTGATCAAATTGCCTTCCTTGATTGAGTACATTGGTTACTGCCTCTGCTGCGGGAGTCACTTTGCTGGTCCTGTTTATGAAATGAAGGATTATCTTGATTGGACTGAAGGAAAAGGGATTTGGAGCACTGAAGCAAAAGGGCCATTGCCATCACCTTATGGGGCAACCCTCCGGGCTCTTCTCCAAGCTGGTTTTTGCATGGCCATGTATTTGAACCTCGTGCCTCATTTTCCTCTGTCCAAGTTTACTGATCCTACCTACCATGAATGGTGTTTCTGGAAAAAATTAAGTTACCAGTATATGTCTGGCTTTACTGCACGTTGGAAGTATTATTTTATCTGGTCAATTTCAGAAGCTTCTATTATAATCTCTGGCCTGGGTTTCAGTGGCTGGACTGATTCGTCCCCACCGAAGCCTTGCTGGGACCGGGCCAAAAATGTAGATATAATAGGTGTTGAGTTTGCAAAGAGTGCAGTTACTATTCCAGCTGTGTGGAATATTCAAGTCAGCACCTGGCTTCGTCATTATGTTTACGAAAGGCTTATTCAGACTGGGAAGAAACCTGGTTTCATTCAGCTACTTGCCACCCAGACCGTTAGTGCTGTTTGGCATGGCTTGTACCCTGGATACATAATATTCTTTGTTCAGTCAGCATTAATGATTGCTGGTTCCAGAGTCATTTACAGATGGCAGCAAGCCGTACCTCCGACGATGTCTCTGGTTAAGAATGTGTTGGTGTTTACAAATTTTGCTTATACACTTTTGGTTCTAAATTACTCCTGCGTTGGTTTCATGGTGTTAAGTCTGCATGAAACCCTTGCCTCATATGGAAGCGTGTATTACATTGGAACTATTATTCCTGTTGTTCTGATTCTTCTTGCCAAAGTAATCAAACCTGGAAAGCCTGCCAGATCTAAAGCTCGGAAGGAACAGTGA >Glyma05g03510.2 sequence type=CDS gene model=Glyma05g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGGATTCCATGGCCGCTTCCATCGGAGTCTCGGTCCCCGTGCTACGCTTCCTCCTCTGCTTTGCCGCCACCGTGCCCCTCAGCTTCCTCTGCCGCCTCCTCCCCCGTGGCCTCCCCAAGCACCTCTACTCCGCCGCCGTCGGCGTCGCCCTCTCCTACCTCTCCTTCGGCGTCTCCTCCAACCTCCACTTCCTCGTCCCCATGTTCCTCGGCTACGCCTCCATGCTCCTCTTTCGTCCCCGATGCGGCATCCTCACCTTCTTCCTCGGATTCGGCTACCTCATTGGCTGCCACGTGTATTACATGAGCGGTGACGCATGGAAGGAAGGTGGCATCGATGCCACTGGGGCCTTAATGGTTTTGACGCTCAAGGTTATCTCCTGTGCGGTTAATTACAACGATGGATTGCTGAAAGAGGAGGGTTTGCGTGAGGCTCAGAAGAAGTACCGTTTGATCAAATTGCCTTCCTTGATTGAGTACATTGGTTACTGCCTCTGCTGCGGGAGTCACTTTGCTGGTCCTGTTTATGAAATGAAGGATTATCTTGATTGGACTGAAGGAAAAGGGATTTGGAGCACTGAAGCAAAAGGGCCATTGCCATCACCTTATGGGGCAACCCTCCGGGCTCTTCTCCAAGCTGGTTTTTGCATGGCCATGTATTTGAACCTCGTGCCTCATTTTCCTCTGTCCAAGTTTACTGATCCTACCTACCATGAATGGTGTTTCTGGAAAAAATTAAGTTACCAGTATATGTCTGGCTTTACTGCACGTTGGAAGTATTATTTTATCTGGTCAATTTCAGAAGCTTCTATTATAATCTCTGGCCTGGGTTTCAGTGGCTGGACTGATTCGTCCCCACCGAAGCCTTGCTGGGACCGGGCCAAAAATGTAGATATAATAGGTGTTGAGTTTGCAAAGAGTGCAGTTACTATTCCAGCTGTGTGGAATATTCAAGTCAGCACCTGGCTTCGTCATTATGTTTACGAAAGGCTTATTCAGACTGGGAAGAAACCTGGTTTCATTCAGCTACTTGCCACCCAGACCGTTAGTGCTGTTTGGCATGGCTTGTACCCTGGATACATAATATTCTTTGTTCAGTCAGCATTAATGATTGCTGGTTCCAGAGGTATATGTTGA
>Glyma05g03510.1 sequence type=predicted peptide gene model=Glyma05g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMDSMAASIGVSVPVLRFLLCFAATVPLSFLCRLLPRGLPKHLYSAAVGVALSYLSFGVSSNLHFLVPMFLGYASMLLFRPRCGILTFFLGFGYLIGCHVYYMSGDAWKEGGIDATGALMVLTLKVISCAVNYNDGLLKEEGLREAQKKYRLIKLPSLIEYIGYCLCCGSHFAGPVYEMKDYLDWTEGKGIWSTEAKGPLPSPYGATLRALLQAGFCMAMYLNLVPHFPLSKFTDPTYHEWCFWKKLSYQYMSGFTARWKYYFIWSISEASIIISGLGFSGWTDSSPPKPCWDRAKNVDIIGVEFAKSAVTIPAVWNIQVSTWLRHYVYERLIQTGKKPGFIQLLATQTVSAVWHGLYPGYIIFFVQSALMIAGSRVIYRWQQAVPPTMSLVKNVLVFTNFAYTLLVLNYSCVGFMVLSLHETLASYGSVYYIGTIIPVVLILLAKVIKPGKPARSKARKEQ* >Glyma05g03510.2 sequence type=predicted peptide gene model=Glyma05g03510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMDSMAASIGVSVPVLRFLLCFAATVPLSFLCRLLPRGLPKHLYSAAVGVALSYLSFGVSSNLHFLVPMFLGYASMLLFRPRCGILTFFLGFGYLIGCHVYYMSGDAWKEGGIDATGALMVLTLKVISCAVNYNDGLLKEEGLREAQKKYRLIKLPSLIEYIGYCLCCGSHFAGPVYEMKDYLDWTEGKGIWSTEAKGPLPSPYGATLRALLQAGFCMAMYLNLVPHFPLSKFTDPTYHEWCFWKKLSYQYMSGFTARWKYYFIWSISEASIIISGLGFSGWTDSSPPKPCWDRAKNVDIIGVEFAKSAVTIPAVWNIQVSTWLRHYVYERLIQTGKKPGFIQLLATQTVSAVWHGLYPGYIIFFVQSALMIAGSRGIC*
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