Glyma05g03470 - SoyBase

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Report for Sequence Feature Glyma05g03470

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2657798
stop:	2664053
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63110	AT	Annotation by Michelle Graham. TAIR10: GPI transamidase subunit PIG-U \| chr1:23404870-23407757 FORWARD LENGTH=469	SoyBase	E_val: 0	ISS
GO:0006506	GO-bp	Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG2552	KOG	Major facilitator superfamily permease - Cdc91p	JGI		ISS
PTHR13121	Panther	GPI TRANSAMIDASE COMPONENT PIG-U	JGI		ISS
PF06728	PFAM	GPI transamidase subunit PIG-U	JGI		ISS
UniRef100_F4I1Z0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GPI transamidase subunit PIG-U n=3 Tax=Arabidopsis thaliana RepID=F4I1Z0_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A108	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A108 related cluster n=1 Tax=unknown RepID=UPI000233A108	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g03470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g03470 not represented in the dataset	Glyma05g03470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03470

Paralog	Evidence	Comments
Glyma17g14010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g049100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g03470

Limit To All Plant Sequences

>Glyma05g03470.3   sequence type=transcript   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCGTTTCGTATGGTAGTCTTCCCTCCTCTTCTGAAAAACACAGAGGCAGAGGCAAGCGAAGCGGTTCCGATCTGAAGACGAAGACGATGAAGAAGAAGAAGGTGCAATGGTTCTGGACTTGCGTTCTTGGTTCCATTGTTTTGAGGCTCATTCTACTCTACTTTCCCAAAAACCTCAACCTCTCTTCTCGCCCCGAAGTCTCCACCCCCCTCACCAGCCTCCGTCACCCTATGCCGGATCAATGTACCATGGTTCCCCTTTGTTATTGACACTTCTCGGTCCGCTCACAGTTAAAAGAATTGAAGGACAACCTGATCATCTTTTATGCAGGTAACTTTCTTCGCCGTTTACATATAATTAGTATCTATTCATTTGTTTATTTCCATAGCTTATGAATCATAATTGCTGTGATCTCCCTTGCTCAATAGTAATATCCGTCGTTGTTGACGAGAAAACATGCGTGTAGTAGCACCAACAAAAAAAGAAATGGTAAGATCTTTACATGTAACGCCGATTGCCATTGTATCTTGTATATGTAGTTCCTCACCCTTGTTTTCCTCCTGGTGTATATTGCTTACTAGGTAGTTAAACAGTAATTAATCATCTCATTTCCGGATATAGTTTGGTTTTTGTGATTGCAGATGTGGTCAGTGCAATGCTTATTTGTGCTGCTGGTGAAAAACTCAAGGTGGCATGCAGTTCAAGCTTGCAATCCCTTGGCCTTCATAATTTGTCAGAGAATTCAGAGCGTCTCCCTTCAGGAGATTTTGCTGCTCTTGTATACTTATGGAATCCTTTCACAATAGTGGCATGCGTTGGTCTATCCACATCTGCAATTGAGAACTTGATGGTTGTGTTATCACTCTATGGAGCATGTTCACGACTAGCTCCGCTGGCAGCTTTTGGGTGGGTCATGGCTACACACTTGTCTCTGTACCCTGCAATCCTTATTATCCCAGTGATATTGCTATTGGGATATGGTCCTGATGCTCCTCCTAGGAAATTATTCTGTCAAAGGAAAAATCTTGAAGTTGGCAACTCTACCCCAAGTGATAGTTGTTCAGAAGAGGAAGCAAAGAATCAGCTAAAGGTGGCAAATGTATTCTCATGGAGGCCAGTGGTGTTTTTTTTGTTCTGGACTTTGCTGTGGTCATCCTACGTCTTGGTCCTTTGTGGCATATGTGTCCAACAGTATGGTGGTCTACATGAGTTGTTCAAAAGAACCTATGGCTTTATTCTTACCACACAAGATCTGTCTCCAAACATTGGTGTTTTGTGGTACTTCTTTGCAGAAGTTTTTGATTTTTTCAGAAATTTCTTCCTGATAGTATTTCATGGGAATATTCTATTGATGATAGCACCATTAGCCTTACGGCTTAATCACCGGCCGTGCTTTCTAGCTTTTGTATATATTGTGATATCTTCTATGTTGAAGTCTTATCCTTCAGTTGGTGATTCAGCTCTGTATTTGGGTTTACTTGGGTTATTTGCATATGAACTCAAAGATATGCAGTTTTCATTCTTCCTGTTTTCTGGCTATGTTGGGGTTTCACTTCTTAGCCCTGTGATGCACAATCTATGGATATGGAGGGGTACTGGAAATGCAAATTTTTACTTTGCGACTGCAATTGCTTATGCGTGCTTGCAGATCATTCTGGTGGTTGAGAGTGTTAGTGCCATGCTCAATCATGACAGAAAGCTTACAAAGCTATATACTGCAAAGCTTCAACACATCAAATCTTGAGTACTTGAAAGTATGCTTTTATGTGTCCATGGTATCCCTGAGCTTCATGTGGACATCTTGGTTCCACGATCCATTGTTGTGCTGCCTTTCAATTCCTTTATCAAATATGTGCATTTCTTTGGATGCAAGCATTTTTCACCGTGATTGTAAATGGACACAAGGCTCTGCAATCTTGATGCTGAATGCCCCACTTACAGTATTTTATAAAGGATGAGCAATCATGATATTTTACTGTGGTTCTTAGATCTCTTTTGTCCTTGATGCACCTTTTAAGAAGTTTCAATGACTTCATTCTTCAAATTCTAGTTGAATGCGGCTCATTCTTCATCTATTTTATACTGCACTTGTTGTCTTGTTGGTCGAAATATCTGTAGCGTGCCTATCGGAATGAACCATACTTAATGACACCAAAAACTCGAGCATATCTTACATTATTGATGTACCTCTTTCTGTATTTATGCGCATGCTCAATCATGGTTTTGGATTACTGTAGTGTGATATTAAGCAAG

>Glyma05g03470.4   sequence type=transcript   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATTTCGTGCATGCTGTATTATTAGATAATCATAGCATGGTACTTGCATGAAGATTACTGACTAGTATTAACAATTAGATATGGAAGTAGGAGTGCCCCTTTTTGACTCTTGGCTTTGCTTTTCTTCCCTTTTTCAGGATAGTGTATTAGAAGTGGAAGAAAAGGATAGGAAATGAATCTCATTATTGATCATTATTTAGGGTTTCAACATCAGAGTCTGAATATATTTATTTATTGAAAAAGGATTAATCTGTAGTTCTATCTACAGAGTTGAAACTTATGGATAAAATTACATGTCTGTGTGGTATCTGTGAACAAATGGATGATGAAGGCTGTGTCAGTCTCATGTTTGGATGATAAAAAGCATGATACTTTTATATCTAGCACTCTTTCCAGAAAAAGAAAATGTGTTTGATTGAATTGCTGAGAAGGAAACAGGATATTTGCAATTATTGTCCCTTCAGGATGAGGATCTTTTTTGAAATTTGTTTTCATCCCTTTTGATAGTATCTTCATTTTTCCAGAGCGTCTCCCTTCAGGAGATTTTGCTGCTCTTGTATACTTATGGAATCCTTTCACAATAGTGGCATGCGTTGGTCTATCCACATCTGCAATTGAGAACTTGATGGTTGTGTTATCACTCTATGGAGCATGTTCACGACTAGCTCCGCTGGCAGCTTTTGGGTGGGTCATGGCTACACACTTGTCTCTGTACCCTGCAATCCTTATTATCCCAGTGATATTGCTATTGGGATATGGTCCTGATGCTCCTCCTAGGAAATTATTCTGTCAAAGGAAAAATCTTGAAGTTGGCAACTCTACCCCAAGTGATAGTTGTTCAGAAGAGGAAGCAAAGAATCAGCTAAAGGTGGCAAATGTATTCTCATGGAGGCCAGTGGTGTTTTTTTTGTTCTGGACTTTGCTGTGGTCATCCTACGTCTTGGTCCTTTGTGGCATATGTGTCCAACAGTATGGTGGTCTACATGAGTTGTTCAAAAGAACCTATGGCTTTATTCTTACCACACAAGATCTGTCTCCAAACATTGGTGTTTTGTGGTACTTCTTTGCAGAAGTTTTTGATTTTTTCAGAAATTTCTTCCTGATAGTATTTCATGGGAATATTCTATTGATGATAGCACCATTAGCCTTACGGCTTAATCACCGGCCGTGCTTTCTAGCTTTTGTATATATTGTGATATCTTCTATGTTGAAGTCTTATCCTTCAGTTGGTGATTCAGCTCTGTATTTGGGTTTACTTGGGTTATTTGCATATGAACTCAAAGATATGCAGTTTTCATTCTTCCTGTTTTCTGGCTATGTTGGGGTTTCACTTCTTAGCCCTGTGATGCACAATCTATGGATATGGAGGGGTACTGGAAATGCAAATTTTTACTTTGCGACTGCAATTGCTTATGCGTGCTTGCAGATCATTCTGGTGGTTGAGAGTGTTAGTGCCATGCTCAATCATGACAGAAAGCTTACAAAGCTATATACTGCAAAGCTTCAACACATCAAATCTTGAGTACTTGAAAGTATGCTTTTATGTGTCCATGGTATCCCTGAGCTTCATGTGGACATCTTGGTTCCACGATCCATTGTTGTGCTGCCTTTCAATTCCTTTATCAAATATGTGCATTTCTTTGGATGCAAGCATTTTTCACCGTGATTGTAAATGGACACAAGGCTCTGCAATCTTGATGCTGAATGCCCCACTTACAGTATTTTATAAAGGATGAGCAATCATGATATTTTACTGTGGTTCTTAGATCTCTTTTGTCCTTGATGCACCTTTTAAGAAGTTTCAATGACTTCATTCTTCAAATTCTAGTTGAATGCGGCTCATTCTTCATCTATTTTATACTGCACTTGTTGTCTTGTTGGTCGAAATATCTGTAGCGTGCCTATCGGAATGAACCATACTTAATGACACCAAAAACTCGAGCATATCTTACATTATTGATGTACCTCTTTCTGTATTTATGCGCATGCTCAATCATGGTTTTGGATTACTGTAGTGTGATATTAAGCAAG

Coding sequences of Glyma05g03470

Limit To All Plant Sequences

>Glyma05g03470.2   sequence type=CDS   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGGACTTGCGTTCTTGGTTCCATTGTTTTGAGGCTCATTCTACTCTACTTTCCCAAAAACCTCAACCTCTCTTCTCGCCCCGAAGTCTCCACCCCCCTCACCAGCCTCCGTCACCCTATGCCGGATCAATGTACCATGGTTCCCCTTTGTTATTGACACTTCTCGGTCCGCTCACAGTTAAAAGAATTGAAGGACAACCTGATCATCTTTTATGCAGTTTGGTTTTTGTGATTGCAGATGTGGTCAGTGCAATGCTTATTTGTGCTGCTGGTGAAAAACTCAAGGTGGCATGCAGTTCAAGCTTGCAATCCCTTGGCCTTCATAATTTGTCAGAGAATTCAGAGCGTCTCCCTTCAGGAGATTTTGCTGCTCTTGTATACTTATGGAATCCTTTCACAATAGTGGCATGCGTTGGTCTATCCACATCTGCAATTGAGAACTTGATGGTTGTGTTATCACTCTATGGAGCATGTTCACGACTAGCTCCGCTGGCAGCTTTTGGGTGGGTCATGGCTACACACTTGTCTCTGTACCCTGCAATCCTTATTATCCCAGTGATATTGCTATTGGGATATGGTCCTGATGCTCCTCCTAGGAAATTATTCTGTCAAAGGAAAAATCTTGAAGTTGGCAACTCTACCCCAAGTGATAGTTGTTCAGAAGAGGAAGCAAAGAATCAGCTAAAGGTGGCAAATGTATTCTCATGGAGGCCAGTGGTGTTTTTTTTGTTCTGGACTTTGCTGTGGTCATCCTACGTCTTGGTCCTTTGTGGCATATGTGTCCAACAGTATGGTGGTCTACATGAGTTGTTCAAAAGAACCTATGGCTTTATTCTTACCACACAAGATCTGTCTCCAAACATTGGTGTTTTGTGGTACTTCTTTGCAGAAGTTTTTGATTTTTTCAGAAATTTCTTCCTGATAGTATTTCATGGGAATATTCTATTGATGATAGCACCATTAGCCTTACGGCTTAATCACCGGCCGTGCTTTCTAGCTTTTGTATATATTGTGATATCTTCTATGTTGAAGTCTTATCCTTCAGTTGGTGATTCAGCTCTGTATTTGGGTTTACTTGGGTTATTTGCATATGAACTCAAAGATATGCAGTTTTCATTCTTCCTGTTTTCTGGCTATGTTGGGGTTTCACTTCTTAGCCCTGTGATGCACAATCTATGGATATGGAGGGGTACTGGAAATGCAAATTTTTACTTTGCGACTGCAATTGCTTATGCGTGCTTGCAGATCATTCTGGTGGTTGAGAGTGTTAGTGCCATGCTCAATCATGACAGAAAGCTTACAAAGCTATATACTGCAAAGCTTCAACACATCAAATCTTGA

>Glyma05g03470.3   sequence type=CDS   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTATTTGTGCTGCTGGTGAAAAACTCAAGGTGGCATGCAGTTCAAGCTTGCAATCCCTTGGCCTTCATAATTTGTCAGAGAATTCAGAGCGTCTCCCTTCAGGAGATTTTGCTGCTCTTGTATACTTATGGAATCCTTTCACAATAGTGGCATGCGTTGGTCTATCCACATCTGCAATTGAGAACTTGATGGTTGTGTTATCACTCTATGGAGCATGTTCACGACTAGCTCCGCTGGCAGCTTTTGGGTGGGTCATGGCTACACACTTGTCTCTGTACCCTGCAATCCTTATTATCCCAGTGATATTGCTATTGGGATATGGTCCTGATGCTCCTCCTAGGAAATTATTCTGTCAAAGGAAAAATCTTGAAGTTGGCAACTCTACCCCAAGTGATAGTTGTTCAGAAGAGGAAGCAAAGAATCAGCTAAAGGTGGCAAATGTATTCTCATGGAGGCCAGTGGTGTTTTTTTTGTTCTGGACTTTGCTGTGGTCATCCTACGTCTTGGTCCTTTGTGGCATATGTGTCCAACAGTATGGTGGTCTACATGAGTTGTTCAAAAGAACCTATGGCTTTATTCTTACCACACAAGATCTGTCTCCAAACATTGGTGTTTTGTGGTACTTCTTTGCAGAAGTTTTTGATTTTTTCAGAAATTTCTTCCTGATAGTATTTCATGGGAATATTCTATTGATGATAGCACCATTAGCCTTACGGCTTAATCACCGGCCGTGCTTTCTAGCTTTTGTATATATTGTGATATCTTCTATGTTGAAGTCTTATCCTTCAGTTGGTGATTCAGCTCTGTATTTGGGTTTACTTGGGTTATTTGCATATGAACTCAAAGATATGCAGTTTTCATTCTTCCTGTTTTCTGGCTATGTTGGGGTTTCACTTCTTAGCCCTGTGATGCACAATCTATGGATATGGAGGGGTACTGGAAATGCAAATTTTTACTTTGCGACTGCAATTGCTTATGCGTGCTTGCAGATCATTCTGGTGGTTGAGAGTGTTAGTGCCATGCTCAATCATGACAGAAAGCTTACAAAGCTATATACTGCAAAGCTTCAACACATCAAATCTTGA

>Glyma05g03470.4   sequence type=CDS   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGTTATCACTCTATGGAGCATGTTCACGACTAGCTCCGCTGGCAGCTTTTGGGTGGGTCATGGCTACACACTTGTCTCTGTACCCTGCAATCCTTATTATCCCAGTGATATTGCTATTGGGATATGGTCCTGATGCTCCTCCTAGGAAATTATTCTGTCAAAGGAAAAATCTTGAAGTTGGCAACTCTACCCCAAGTGATAGTTGTTCAGAAGAGGAAGCAAAGAATCAGCTAAAGGTGGCAAATGTATTCTCATGGAGGCCAGTGGTGTTTTTTTTGTTCTGGACTTTGCTGTGGTCATCCTACGTCTTGGTCCTTTGTGGCATATGTGTCCAACAGTATGGTGGTCTACATGAGTTGTTCAAAAGAACCTATGGCTTTATTCTTACCACACAAGATCTGTCTCCAAACATTGGTGTTTTGTGGTACTTCTTTGCAGAAGTTTTTGATTTTTTCAGAAATTTCTTCCTGATAGTATTTCATGGGAATATTCTATTGATGATAGCACCATTAGCCTTACGGCTTAATCACCGGCCGTGCTTTCTAGCTTTTGTATATATTGTGATATCTTCTATGTTGAAGTCTTATCCTTCAGTTGGTGATTCAGCTCTGTATTTGGGTTTACTTGGGTTATTTGCATATGAACTCAAAGATATGCAGTTTTCATTCTTCCTGTTTTCTGGCTATGTTGGGGTTTCACTTCTTAGCCCTGTGATGCACAATCTATGGATATGGAGGGGTACTGGAAATGCAAATTTTTACTTTGCGACTGCAATTGCTTATGCGTGCTTGCAGATCATTCTGGTGGTTGAGAGTGTTAGTGCCATGCTCAATCATGACAGAAAGCTTACAAAGCTATATACTGCAAAGCTTCAACACATCAAATCTTGA

Predicted protein sequences of Glyma05g03470

Limit To All Plant Sequences

>Glyma05g03470.2   sequence type=predicted peptide   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLDLRSWFHCFEAHSTLLSQKPQPLFSPRSLHPPHQPPSPYAGSMYHGSPLLLTLLGPLTVKRIEGQPDHLLCSLVFVIADVVSAMLICAAGEKLKVACSSSLQSLGLHNLSENSERLPSGDFAALVYLWNPFTIVACVGLSTSAIENLMVVLSLYGACSRLAPLAAFGWVMATHLSLYPAILIIPVILLLGYGPDAPPRKLFCQRKNLEVGNSTPSDSCSEEEAKNQLKVANVFSWRPVVFFLFWTLLWSSYVLVLCGICVQQYGGLHELFKRTYGFILTTQDLSPNIGVLWYFFAEVFDFFRNFFLIVFHGNILLMIAPLALRLNHRPCFLAFVYIVISSMLKSYPSVGDSALYLGLLGLFAYELKDMQFSFFLFSGYVGVSLLSPVMHNLWIWRGTGNANFYFATAIAYACLQIILVVESVSAMLNHDRKLTKLYTAKLQHIKS*

>Glyma05g03470.3   sequence type=predicted peptide   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLICAAGEKLKVACSSSLQSLGLHNLSENSERLPSGDFAALVYLWNPFTIVACVGLSTSAIENLMVVLSLYGACSRLAPLAAFGWVMATHLSLYPAILIIPVILLLGYGPDAPPRKLFCQRKNLEVGNSTPSDSCSEEEAKNQLKVANVFSWRPVVFFLFWTLLWSSYVLVLCGICVQQYGGLHELFKRTYGFILTTQDLSPNIGVLWYFFAEVFDFFRNFFLIVFHGNILLMIAPLALRLNHRPCFLAFVYIVISSMLKSYPSVGDSALYLGLLGLFAYELKDMQFSFFLFSGYVGVSLLSPVMHNLWIWRGTGNANFYFATAIAYACLQIILVVESVSAMLNHDRKLTKLYTAKLQHIKS*

>Glyma05g03470.4   sequence type=predicted peptide   gene model=Glyma05g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVLSLYGACSRLAPLAAFGWVMATHLSLYPAILIIPVILLLGYGPDAPPRKLFCQRKNLEVGNSTPSDSCSEEEAKNQLKVANVFSWRPVVFFLFWTLLWSSYVLVLCGICVQQYGGLHELFKRTYGFILTTQDLSPNIGVLWYFFAEVFDFFRNFFLIVFHGNILLMIAPLALRLNHRPCFLAFVYIVISSMLKSYPSVGDSALYLGLLGLFAYELKDMQFSFFLFSGYVGVSLLSPVMHNLWIWRGTGNANFYFATAIAYACLQIILVVESVSAMLNHDRKLTKLYTAKLQHIKS*

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