Glyma05g03450 - SoyBase

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Report for Sequence Feature Glyma05g03450

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2638386
stop:	2641896
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23060	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 22 \| chr4:12087283-12090408 FORWARD LENGTH=484	SoyBase	E_val: 2.00E-66	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF72	Panther	MYOSIN-IX A, B	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_B9RC42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RC42_RICCO	SoyBase	E_val: 2.00E-110	ISS
UniRef100_UPI000233A107	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A107 related cluster n=1 Tax=unknown RepID=UPI000233A107	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g03450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03450

Paralog	Evidence	Comments
Glyma17g14000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g049000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g03450

Limit To All Plant Sequences

>Glyma05g03450.2   sequence type=CDS   gene model=Glyma05g03450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAGGCAACAAAGTGGTTTCGCGGGTTTTTCGGTCTCAAAAAAACAGAGTACACTGCCCCACCCGCCAAGCCTCCCAAAGAGAAACGCCGATGGAGCTTCGTTAAATCATACACTGAAAAAGACAACACCACTGCCGCCACGTGTCCACCACAAAGAAACAACAACAACCACGCCATGGCAGTAGCAGCAGCCACCGCTGCCGTGGCGGAAGCGGCGGTGGCTGCCGCCGAAGCCGCAGCCGTCGTGGTGAGACTAACAAGCAGCAGCGGTAGGTGCGCCGACGCTGGACCCACCAGGATTCGACAACATTGGGCTGCTGTTAGGATCCAAGCCGCTTTTCGAGGATGTTTGGCAAGGAGAGCACTGCGAGCATTAAAGGGATTGGTGAAGTTGCAGGCATTGGTGAGAGGTCACATTGAGAGGAAGCGCACAGCGGAGTGGCTGAAAAGAGTGCAAGTACTCTTACATGCACAGCCACAAGTTTCTGCAGGGTTGATCCTGCATGCCTCACCTTCGGGTTCAAAGTTATCTAGCCACCTCCATGGTCCAGAAACACCCGAAAAATTTGAAAGCCCTATCAGATCTAAGAGCATGAAACATGAGCACTCACCTATACTCAAGAGAAATGGCTCCAAATCCTGTGTCCAGATCAATGGCTATCAAGAGATGTGTGGGAGTAGATCAGAGAGTCAAGTGAATGAACAATCATGGAACTCAGGAAGATCATTGAATAGAACATACAGCTCCAATGATGAAAGAAATGACAGAGTTCTTGAAGTTGATTCTGGAAAACCACACTTCACAATAAAGCGCAAAAATCTCTCTTTCTCCACAGGTTCTGATCTTTATAGTAAGAGTTTGAACAGCACAAAGGAATCAACATCTCTTCAATCTGGTCAAAGTTCATGCTGTGAGGTTCAGTCTCACAGTTACACCTCACAAAAAGTGAATGAGGTTGAGGAGAGTCCATTCTGCACTGCTGACAATAGTCCACAATATTTATCTGCCACTTCTAAAGATGGTGGCTTCAAAAGAAGCCCTTTTACTCCTACTAAGAGTGATGGCTCTAGAAGCTACATTCGTGGTTACCCTGATTATCCAAGTTACATGGCATGCACTGAATCTTCAAAGGCAAAGGCCAGATCTCTGAGTGCACCAAAACAAAGACCTCAAAGTGAGAAGTCTGGTTCATCTAATAGATACTCACTTAATGGATTTGATATGTCAAGATTGGCCACACAAAGGGCAATGCAAGCAAGCTTCACCAACAAAGCATATCCAGGTTCTGGTCGTTTGGACAAGCTTGGTATGCCTGTGGGATACAGATTCTGA

Predicted protein sequences of Glyma05g03450

Limit To All Plant Sequences

>Glyma05g03450.2   sequence type=predicted peptide   gene model=Glyma05g03450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKATKWFRGFFGLKKTEYTAPPAKPPKEKRRWSFVKSYTEKDNTTAATCPPQRNNNNHAMAVAAATAAVAEAAVAAAEAAAVVVRLTSSSGRCADAGPTRIRQHWAAVRIQAAFRGCLARRALRALKGLVKLQALVRGHIERKRTAEWLKRVQVLLHAQPQVSAGLILHASPSGSKLSSHLHGPETPEKFESPIRSKSMKHEHSPILKRNGSKSCVQINGYQEMCGSRSESQVNEQSWNSGRSLNRTYSSNDERNDRVLEVDSGKPHFTIKRKNLSFSTGSDLYSKSLNSTKESTSLQSGQSSCCEVQSHSYTSQKVNEVEESPFCTADNSPQYLSATSKDGGFKRSPFTPTKSDGSRSYIRGYPDYPSYMACTESSKAKARSLSAPKQRPQSEKSGSSNRYSLNGFDMSRLATQRAMQASFTNKAYPGSGRLDKLGMPVGYRF*

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