Glyma05g03440 - SoyBase

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Report for Sequence Feature Glyma05g03440

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2631140
stop:	2634702
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63160	AT	Annotation by Michelle Graham. TAIR10: replication factor C 2 \| chr1:23422068-23423771 REVERSE LENGTH=333	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005663	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA replication factor C complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0991	KOG	Replication factor C, subunit RFC2	JGI		ISS
PTHR11669	Panther	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF08542	PFAM	Replication factor C	JGI		ISS
UniRef100_B9RC55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Replication factor C / DNA polymerase III gamma-tau subunit, putative n=1 Tax=Ricinus communis RepID=B9RC55_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K0C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K0C4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g03440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03440

Paralog	Evidence	Comments
Glyma17g13990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g048900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g03440

Limit To All Plant Sequences

>Glyma05g03440.2   sequence type=transcript   gene model=Glyma05g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGTTTTTTCCCTCTAAAAACTCGGACAAATTCCCTCCAAGTTTGAAGTAGTTTTAGGCACATAGGGTTTGGACTTTGGAAAGGCTTATTCTCCGCTCTCGTCTGAAACCTGAAACCCTTTGTTCTTCGTCGGCGGAAGCATGTCATCGTCATCATCAAGCAACGCCTACGACGTGCCATGGGTAGAAAAGTACCGTCCCAGCAAGGTCGCCGACATCGTCGGCAACGAGGACGCCGTCTCCAGGCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGAACCGGCAAAACCACTAGCATTCTCGCCCTCGCGCACGAGCTTCTCGGAGGACCAAATTGCAAGGAAGCTGTTCTCGAACTAAACGCTTCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTCACACTGACCCCGGGGAGGCACAAGATAGTGATACTGGATGAAGCTGATAGCATGACCACAGGGGCACAACAAGCATTGAGAAGGACGATGGAGATATATTCAAACACCACTCGGTTTGCCCTTGCTTGCAATACCTCAGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCACGGTTGTCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTCCCTGAAGGACTTGAAGCCATCATTTTCACAGCTGACGGTGATATGAGACAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGTTCAGGCCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACGACACTCTTTCGTATAATAAAAAATTATGATATGGCCGAGTACCTGAAATTGGAATTCATGAAGGTAGTTAATTATCCGTTGGCTTAGACACACATACATACATAAAGTATCTGGCTGACAGTTTTCAAATTGCAGGAAACTGGTTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGTTGTGTGGTCTATTGGCTAAGCTTTCTCTAGTTCGTGAGACAGCTAAAGCTGTATGAGCTGGTCCTAAGTGCAACTGAGATGTCATTATTTTTAACTTTTCCGATAGTGAAATGTTCTGCTGATGTAGCCTTATATTTTTTATGTCCAGATGCTAACTGATACATCAATGTTTCGGCTTCTATAAATATGTTGTGTTTTAGCTTGGATCAATAACTCCCACTTTTGAAAATATTTTATCTGTATATTTAGTTATGATCTCAATGTTCAAATCTATGATGAATCAAGCATAACTCATTGAATTATCTGT

Coding sequences of Glyma05g03440

Limit To All Plant Sequences

>Glyma05g03440.1   sequence type=CDS   gene model=Glyma05g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCGTCATCATCAAGCAACGCCTACGACGTGCCATGGGTAGAAAAGTACCGTCCCAGCAAGGTCGCCGACATCGTCGGCAACGAGGACGCCGTCTCCAGGCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGAACCGGCAAAACCACTAGCATTCTCGCCCTCGCGCACGAGCTTCTCGGAGGACCAAATTGCAAGGAAGCTGTTCTCGAACTAAACGCTTCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTCACACTGACCCCGGGGAGGCACAAGATAGTGATACTGGATGAAGCTGATAGCATGACCACAGGGGCACAACAAGCATTGAGAAGGACGATGGAGATATATTCAAACACCACTCGGTTTGCCCTTGCTTGCAATACCTCAGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCACGGTTGTCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTCCCTGAAGGACTTGAAGCCATCATTTTCACAGCTGACGGTGATATGAGACAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGTTCAGGCCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACGACACTCTTTCGTATAATAAAAAATTATGATATGGCCGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGTTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGTTGTGTGGTCTATTGGCTAAGCTTTCTCTAGTTCGTGAGACAGCTAAAGCTGTATGA

>Glyma05g03440.2   sequence type=CDS   gene model=Glyma05g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCGTCATCATCAAGCAACGCCTACGACGTGCCATGGGTAGAAAAGTACCGTCCCAGCAAGGTCGCCGACATCGTCGGCAACGAGGACGCCGTCTCCAGGCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGAACCGGCAAAACCACTAGCATTCTCGCCCTCGCGCACGAGCTTCTCGGAGGACCAAATTGCAAGGAAGCTGTTCTCGAACTAAACGCTTCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTCACACTGACCCCGGGGAGGCACAAGATAGTGATACTGGATGAAGCTGATAGCATGACCACAGGGGCACAACAAGCATTGAGAAGGACGATGGAGATATATTCAAACACCACTCGGTTTGCCCTTGCTTGCAATACCTCAGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCACGGTTGTCTGATCAAGAGATACTTGGTCGTCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTCCCTGAAGGACTTGAAGCCATCATTTTCACAGCTGACGGTGATATGAGACAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGTTCAGGCCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACGACACTCTTTCGTATAATAAAAAATTATGATATGGCCGAGTACCTGAAATTGGAATTCATGAAGGTAGTTAATTATCCGTTGGCTTAG

Predicted protein sequences of Glyma05g03440

Limit To All Plant Sequences

>Glyma05g03440.1   sequence type=predicted peptide   gene model=Glyma05g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSSSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV*

>Glyma05g03440.2   sequence type=predicted peptide   gene model=Glyma05g03440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSSSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKVVNYPLA*

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