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Report for Sequence Feature Glyma05g03281

Feature Type:gene_model
Chromosome:Gm05
Start:2516712
stop:2522471
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g03281
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63460AT Annotation by Michelle Graham. TAIR10: SAP domain-containing protein | chr5:25413605-25415399 REVERSE LENGTH=162 SoyBaseE_val: 7.00E-40ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PF10172PFAM Det1 complexing ubiquitin ligase JGI ISS
UniRef100_B9RAH0UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RAH0_RICCO SoyBaseE_val: 2.00E-41ISS
UniRef100_I1K0A6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K0A6_SOYBN SoyBaseE_val: 3.00E-76ISS

Expression Patterns of Glyma05g03281
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g03281 not represented in the dataset
Glyma05g03281 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03281
ParalogEvidenceComments
Glyma17g13860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03281 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g047500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g03281
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma05g03281
>Glyma05g03281.2   sequence type=transcript   gene model=Glyma05g03281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGACTCGAGTTGCGAAGTGGGCGTAACGGGATCCCTCTCGTCAAAGGAAGAGTCCACAAACATTACTACAATTACAAGGTCCACCGGCCTTCGCTGTGTTGGTCCACACATATATATAGAGCAGAAAGTTAAGGTGTTGTTGGCGTCGCTTCAGTTTTCAAAGTGTGACACTTCCAAGAACCAAAAAAGACGCCAAGTCGTCCGTTCCAGTGGTAGTAATGGATGCACTGAATCCTTCTTCTTCCGGCGCTTCTCTGTTCCTCGCCAATCTTCCCTCTCGCGGCCTCTTCTCTTCCACCGTCGTTTCGTCCAATCCGGGTGGGATGCGGGTCTACGTATGCGATCATGATACCTCACCACCAGAAGGTCAACATATTAAGACAAACCAACAAAACATACTGATTAGATCACTCACCCTCAAGAAACAAAGGGGTGATTCCAGCTCAAAGGATGGATCTGATGGTTCAAGAAAGAGGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAACCAAATAAATTCCAGACAAGAGGGATCAAACAGTCAAACAACCACTAGGACTTCCACAACCTGACTGTAGAGAGGCTTCGTGCTCTTTTGAAATCTAAAGGTCTTTCAACCAAAGGAAAGAAGGAGGAGCTTATTACTCGTCTAAAAGATGCAACTGGTTAAGCGTAGCATGGTGGAAGGAATACTCTGTTCATTAAGCATCCAAATGTAAGAGTAGCTAGTGTTTAATGTAACTTAGGATCTGGAACTCTAATATATATAAACCCAGTGCAAATTACAGTTACAGTTGAATATTATCGTTTTGGTGCTACTGTTTCATGACAATCAGCATTAATTATGTTTTTTGGTGCGTGAATTATAGAGGGCAACGGTGGCTTTCAAGTAATATTTACGATCCACAGTTGCATATTTTCCTTTTTCTATCCCATCTCTTGTTAAGTTAGACATGTAAATAGGTTCTATGGTGACCTTCAGTGTCTGTATTTTCTTGCATTAATCATTGTGTTAAGATTTGTACCAACATCAATTGTGCCATTGCATTTTTAACGCATGCATTCAC
Coding sequences of Glyma05g03281
>Glyma05g03281.1   sequence type=CDS   gene model=Glyma05g03281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACCTCATGGGAGAAGCTTGGAGTTTGGAGCTACTTGCTTGGAGGAAGATTAAATTTTCAAAGTGTGACACTTCCAAGAACCAAAAAAGACGCCAAGTCGTCCGTTCCAGTGGTAGTAATGGATGCACTGAATCCTTCTTCTTCCGGCGCTTCTCTGTTCCTCGCCAATCTTCCCTCTCGCGGCCTCTTCTCTTCCACCGTCGTTTCGTCCAATCCGGGTGGGATGCGGGTCTACGTATGCGATCATGATACCTCACCACCAGGTCAACATATTAAGACAAACCAACAAAACATACTGATTAGATCACTCACCCTCAAGAAACAAAGGGGTGATTCCAGCTCAAAGGATGGATCTGATGGTTCAAGAAAGAGGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAACCAAATAAATTCCAGACAAGAGGGATCAAACAGTCAAACAACCACTAGGACTTCCACAACCTGA

>Glyma05g03281.2   sequence type=CDS   gene model=Glyma05g03281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCACTGAATCCTTCTTCTTCCGGCGCTTCTCTGTTCCTCGCCAATCTTCCCTCTCGCGGCCTCTTCTCTTCCACCGTCGTTTCGTCCAATCCGGGTGGGATGCGGGTCTACGTATGCGATCATGATACCTCACCACCAGAAGGTCAACATATTAAGACAAACCAACAAAACATACTGATTAGATCACTCACCCTCAAGAAACAAAGGGGTGATTCCAGCTCAAAGGATGGATCTGATGGTTCAAGAAAGAGGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAACCAAATAAATTCCAGACAAGAGGGATCAAACAGTCAAACAACCACTAGGACTTCCACAACCTGA
Predicted protein sequences of Glyma05g03281
>Glyma05g03281.1   sequence type=predicted peptide   gene model=Glyma05g03281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTSWEKLGVWSYLLGGRLNFQSVTLPRTKKDAKSSVPVVVMDALNPSSSGASLFLANLPSRGLFSSTVVSSNPGGMRVYVCDHDTSPPGQHIKTNQQNILIRSLTLKKQRGDSSSKDGSDGSRKRNAEKGLERASAKKTNNQINSRQEGSNSQTTTRTSTT*

>Glyma05g03281.2   sequence type=predicted peptide   gene model=Glyma05g03281   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDALNPSSSGASLFLANLPSRGLFSSTVVSSNPGGMRVYVCDHDTSPPEGQHIKTNQQNILIRSLTLKKQRGDSSSKDGSDGSRKRNAEKGLERASAKKTNNQINSRQEGSNSQTTTRTSTT*






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