SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24830 | AT | Annotation by Michelle Graham. TAIR10: arginosuccinate synthase family | chr4:12793085-12795857 REVERSE LENGTH=494 | SoyBase | E_val: 0 | ISS |
| GO:0006526 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process | SoyBase | N/A | ISS |
| GO:0006567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: threonine catabolic process | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: argininosuccinate synthase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG1706 | KOG | Argininosuccinate synthase | JGI | ISS | |
| PTHR11587 | Panther | ARGININOSUCCINATE SYNTHASE | JGI | ISS | |
| PF00764 | PFAM | Arginosuccinate synthase | JGI | ISS | |
| UniRef100_G7JWM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Argininosuccinate synthase n=1 Tax=Medicago truncatula RepID=G7JWM6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K0A0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K0A0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma05g03210 not represented in the dataset |
Glyma05g03210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g046900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g03210.1 sequence type=CDS gene model=Glyma05g03210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATACAACAACACTCTCACTCACTCGCTGTGTTGCCCTACGTGGAAAATTGAGTAAGGTTGTGCTGGCTTACAGTGGTGGCTTAGACACATCAGTCATTGTTCCATGGCTCAGAGAGAATTATGGTTGTGAAGTCGTTTGCTTCACTGCTGATGTTGGCCAAGGTATACAAGAATTGGAAGGTTTAGAAGCGAAAGCTAAAGCCAGTGGGGCTAGTCAATTAGTGGTAAAAGACTTGAAGGAGGAATTTGTTAGTGACTATGTATTTCCTTGCCTACGTGCTGGTGCAGTTTATGAGAGGAAGTATTTGCTTGGGACCTCAATGGCCCGCCCTGTAATTGCAAAGGCCATGGTTGATGTTGCCAAAGAAGTTGGAGCTGATGCCGTTTCCCATGGGTGTACAGGGAAAGGGAATGATCAGGCATGTCTTACTATTGGGCTCACACGACTTATAAATCATGTTCGTTTTGAGCTCACTTTCTTTGCTCTGAACCCCAAGCTCAACGTTGTGGCTCCGTGGAGGGAGTGGGATATTACAGGGAGGGAAGACGCTATTGAGTATGCTAAAAAGCATAATATTCCTGTTCCTGTGACAAAGACATCCATATATAGCAGGGATAGGAATCTTTGGCACCTTAGCCATGAGGGAGATATTTTGGAAGACCCAGCTAATGAGCCTAAAAAGGACATGTACATAATGTCTGTAGACCCTGAGGATGCTCCTGATCAACCAGAATATGTGGAAATTGGGATAGAGTCAGGGCTTCCTGTTTCAGTGAATGGGAGGAGGCTTTCACCAGCATCTTTACTTGCTGAGCTCAATGAGATTGGTGGAAAGCATGGAATTGGCAGGGTCGACATGCCGTGGAGTGTACGAACTCCAGGAGGAACCATTCTGTTTGCTGCAGCACGCGAGTTGGAGTCTTTGACACTTGATCGTGAAACAATACAAGTCAAAGATTCATTAGCCCTTAAATATGCAGAGTTAGTGTATGCTGGCAGATGGTTTGATCCGCTTCGGGAGTCCATGGATGCCTTTATGCAGAAGATCACGGAGACCACAACAGGTTCTGTGACTTTGAAACTTTACAAAGGTTCTGTTACTGCAACCAGCCGAACGAGTCCCTTTAGCCTGTATAGGCAAGACATTTCATCGTTTGAAAGTGGGCAGATATATGATCAAGCTGATGCTGCTGGGTTCATCAGGCTTTATGGTCTTCCAATGCGGGTCCGAGCAATGCTTGAACATGGCATCTAA
>Glyma05g03210.1 sequence type=predicted peptide gene model=Glyma05g03210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high YTTTLSLTRCVALRGKLSKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGIQELEGLEAKAKASGASQLVVKDLKEEFVSDYVFPCLRAGAVYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQACLTIGLTRLINHVRFELTFFALNPKLNVVAPWREWDITGREDAIEYAKKHNIPVPVTKTSIYSRDRNLWHLSHEGDILEDPANEPKKDMYIMSVDPEDAPDQPEYVEIGIESGLPVSVNGRRLSPASLLAELNEIGGKHGIGRVDMPWSVRTPGGTILFAAARELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMQKITETTTGSVTLKLYKGSVTATSRTSPFSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLEHGI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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