Glyma05g03130 - SoyBase

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Report for Sequence Feature Glyma05g03130

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2405989
stop:	2407267
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67580	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:25327727-25330965 REVERSE LENGTH=752	SoyBase	E_val: 7.00E-77	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0009888	GO-bp	Annotation by Michelle Graham. GO Biological Process: tissue development	SoyBase	N/A	ISS
GO:0010638	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0594	KOG	Protein kinase PCTAIRE and related kinases	JGI		ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF86	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_A2XUW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-dependent kinase G-2 n=3 Tax=Oryza sativa RepID=CDKG2_ORYSI	SoyBase	E_val: 3.00E-79	ISS
UniRef100_I1K094	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K094_SOYBN	SoyBase	E_val: 3.00E-129	ISS

Expression Patterns of Glyma05g03130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma05g03130 not represented in the dataset	Glyma05g03130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma05g03130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g046200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g03130

Limit To All Plant Sequences

>Glyma05g03130.2   sequence type=CDS   gene model=Glyma05g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCCTTGAGAGAAGTAAACATTTTCTTGTCTTTTAATCATCCCTCCATTATGAATGTTAAAGAAGTAGTTGTTGTTGATGATTTTGATGGTACTTTTATGGTAATGGAGCACATGGAGTATGACCTGAAGGGGCTGACGGAGGTTAAGAAGCATCCCTTTAGCATGAGTGAAATTAAATCCTTGGTACGGCAACTTCTTGAAGGTGTCAAATATCTCTTTCATGTAGGAGCACCTGAAATTTTGCTGGGTGCTAAAGAATACTCAACAGCAATTGGCATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTGCCAAGGAAACTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATAAGATTTTTCCAACCCTTGGTACGCCTGATGAGAAAATTTGGCCAGGATTATTCAAATTACCTGGGGCTAAAGCAAATTTTGAAGAAGTTTCCAGCTGCATCGTTTATGGTTTGCCAGTTTTATCTGAGCAAGGATTTGACTTGTTGAAGCAGCTGCTAACTTATGACCCTGAAAAGAGGATAACAGCAGAAGATGCCCTCCTTCATGATTGGTTCCATGAAGCCCCTCTTCCCAAATCTGATTTCAAGCCAATTTTTCCTTCTTGGCAGTGA

Predicted protein sequences of Glyma05g03130

Limit To All Plant Sequences

>Glyma05g03130.2   sequence type=predicted peptide   gene model=Glyma05g03130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSLREVNIFLSFNHPSIMNVKEVVVVDDFDGTFMVMEHMEYDLKGLTEVKKHPFSMSEIKSLVRQLLEGVKYLFHVGAPEILLGAKEYSTAIGMWSVGCIMAELIAKETLFRGKSELEQLDKIFPTLGTPDEKIWPGLFKLPGAKANFEEVSSCIVYGLPVLSEQGFDLLKQLLTYDPEKRITAEDALLHDWFHEAPLPKSDFKPIFPSWQ*

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