Report for Sequence Feature Glyma05g03080
Feature Type: gene_model
Chromosome: Gm05
Start: 2354899
stop: 2355768
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma05g03080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G63350 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 103 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:25380216-25381124 REVERSE LENGTH=302
SoyBase E_val: 2.00E-60 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
UniRef100_I1K087 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K087_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9FGW7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB62340.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FGW7_ARATH
SoyBase E_val: 8.00E-58 ISS
Expression Patterns of Glyma05g03080
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma05g03080
Paralog Evidence Comments
Glyma17g13720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma05g03080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.05g045800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma05g03080
Coding sequences of Glyma05g03080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma05g03080.1 sequence type=CDS gene model=Glyma05g03080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTTAAGAGGAGGCTGTTGCATCGCCAGGTATGTACCCGGTGCATCCCACGTGTCCACCGTCGACAAAATAATGCTTAGGTTTCGTCCAATCGCTCCCAAACCCGCCGCCGGAGCCACCGCTTCCGACGGATCTTCGTCTGAAACCAGCGACGCTTTTCTCAGAAACGGAAACACGAAGAGAAAGTACGTAAGAGATAGCAACTACACCAGCAAACGTAGAATCTGCCGGAGAAAGAACTCTAATTCCTCACCGGAGCAGAAGCAGAAGCAAACGACGCCGGCTGTGACTCTTCCTTTGCTTCCAGAAACTCCCGATCGGAAGGATTTTCCGGCAAAGGATCTAACTCCATCACCAGTGCGAAACAACAACAACAACAACAGCAGCAACAAGAGCAAGAAGTTGAATATTATTAACAAGAACGTGCCGGTGTGGGTGAGTTTTGCGAATCGAAGCCTTACGATGATGGGAGGGTGGTGTTCGTGTGTGACGGTGGAGAGCTTGACGGACACGTGGGTGGAGGGCGAGTGGCTGGGGAGTACGGACGAGGAACGCAGAGTGAATCTGAGCAAGGACACGTGTCCGGGGTTCATATCAGACGGTTACGGGAGGGTGACGGGGACGAATGAAGCATACGAGAAGATGATGGAGGGTGATGAGGGACAGGGACCAGTGTTGCTGGTGAATAAGGTGAACACAGTGGTTCCGCACGCGTCGTTCACGTGCTTGGTGAGGGTGGTGCAATACGCGTGTGGGAGGGAGAGAAGCTCTCTCACGGTGCCCTGCGACGTGTGGAGAATGGACTCTGGTGGGTTTGCATGGAGATTAGACGTTGAAACTGCGCTTAGCTTGAGACTGGGTTACTAA
Predicted protein sequences of Glyma05g03080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma05g03080.1 sequence type=predicted peptide gene model=Glyma05g03080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDLRGGCCIARYVPGASHVSTVDKIMLRFRPIAPKPAAGATASDGSSSETSDAFLRNGNTKRKYVRDSNYTSKRRICRRKNSNSSPEQKQKQTTPAVTLPLLPETPDRKDFPAKDLTPSPVRNNNNNNSSNKSKKLNIINKNVPVWVSFANRSLTMMGGWCSCVTVESLTDTWVEGEWLGSTDEERRVNLSKDTCPGFISDGYGRVTGTNEAYEKMMEGDEGQGPVLLVNKVNTVVPHASFTCLVRVVQYACGRERSSLTVPCDVWRMDSGGFAWRLDVETALSLRLGY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
