Glyma05g03060 - SoyBase

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Report for Sequence Feature Glyma05g03060

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2332274
stop:	2334954
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24400	AT	Annotation by Michelle Graham. TAIR10: lysine histidine transporter 2 \| chr1:8651563-8653561 REVERSE LENGTH=441	SoyBase	E_val: 6.00E-159	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015172	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acidic amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: neutral amino acid transmembrane transporter activity	SoyBase	N/A	ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_G7JMK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysine/histidine transporter n=1 Tax=Medicago truncatula RepID=G7JMK9_MEDTR	SoyBase	E_val: 3.00E-159	ISS
UniRef100_I1K085	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K085_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g03060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03060

Paralog	Evidence	Comments
Glyma17g13710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g045600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g03060

Limit To All Plant Sequences

>Glyma05g03060.2   sequence type=CDS   gene model=Glyma05g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAAAAATATGAATGATTGGCTTCCCATCACTAAATCCAGGAACGCAAAGTGGTGGAATTCCGCTGTTCACAATGTCGCTGCTATGGTTGGAGCAGGAGTGTTGGGTTTTCCCTACGCTATGTCTGAACTAGGATGGTGTTGGGGTGTTACAATATTGATAGTTTCATGGATTTGCACTCTCTACACTGCATGGCAAATGATTCAAATGCACGAGCCTGAACCGGGAAAGAGACTCGATAGGTATTATGAATTGGGGCAGTATGCGTTTGGGGAAAAGCTTGGAGTGTGGATTGTGGTGCCTCAGCAACTAATGGTTGAGGTTTCTATTAATATAATTTATATGATCACTGGTGGGAATTCTCTAATGAAGATTCATCAGATTCTTTGTGATAACTGTGAGCCCATTAAGAGAACTTACTTCATCATGATGTTTGCTTCCGTTCAATTCGTTCTCTCCCATCTCCCTGGTTTCAACTCCATCTCTGGTATTTCTTTGGCTGCAGCTGTTATGTCCCTCAGTTACTCGGCTATTGCCTGGATAGCTTCATTTCACAGGGGCGTTGTACCAGGCGTGGAATATGGTAGCAGATTTTCAACCGATGCAGGAAATGTGTTTGGGTTCTTAGGTGGGTTGGGAACAATGGCTTTTGGGTATGCTGGGCACAATGTAGTTTTGGAGATCCAAGCAACCATGCCTTCCACACCTGAAAAGCCCTCCAAAATAGCCATGTGGAGGGGCTTTTTTGTTGCTTATCTCATAGTGGCTATGCTTTATTTTCCTATTGCTGTTTGTGGCTACTGGGCTTTTGGAAACACTGTTGAAGACAACATCCTTATGTCCCTTGAGAAACCACGCTGGCTCATTGTAGCTGCTAATGTATTTGTTGTTGTCCATGTAACTGGAAGCTATCAGATCTGCATTGCATTTGGAGTGTTATTGTTGGTGTTAGCCCCTATTGGCGGATTGAGGCTGCATGATTTTACTCATGACCCATCTTTTTGCACAAAGGAGGCTGCATGA

Predicted protein sequences of Glyma05g03060

Limit To All Plant Sequences

>Glyma05g03060.2   sequence type=predicted peptide   gene model=Glyma05g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGKNMNDWLPITKSRNAKWWNSAVHNVAAMVGAGVLGFPYAMSELGWCWGVTILIVSWICTLYTAWQMIQMHEPEPGKRLDRYYELGQYAFGEKLGVWIVVPQQLMVEVSINIIYMITGGNSLMKIHQILCDNCEPIKRTYFIMMFASVQFVLSHLPGFNSISGISLAAAVMSLSYSAIAWIASFHRGVVPGVEYGSRFSTDAGNVFGFLGGLGTMAFGYAGHNVVLEIQATMPSTPEKPSKIAMWRGFFVAYLIVAMLYFPIAVCGYWAFGNTVEDNILMSLEKPRWLIVAANVFVVVHVTGSYQICIAFGVLLLVLAPIGGLRLHDFTHDPSFCTKEAA*

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