Glyma05g03050 - SoyBase

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Report for Sequence Feature Glyma05g03050

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2322757
stop:	2327263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g03050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09840	AT	Annotation by Michelle Graham. TAIR10: Putative endonuclease or glycosyl hydrolase \| chr5:3059027-3061970 FORWARD LENGTH=924	SoyBase	E_val: 2.00E-86	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF01936	PFAM	Protein of unknown function DUF88	JGI		ISS
UniRef100_G7JAW3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Limkain-b1 n=1 Tax=Medicago truncatula RepID=G7JAW3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K084	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K084_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g03050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03050

Paralog	Evidence	Comments
Glyma17g13700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g045500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g03050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g03050

Limit To All Plant Sequences

>Glyma05g03050.2   sequence type=CDS   gene model=Glyma05g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCGGTTCCCGATTGTTCCTGATCCCCGCTGCGAGGCCCGTTCTCTGCAAAAACGTCTTCTTCATTTCCTCTTATTCTACTCGCACGCTCGAACTGTGCGAATCATCATCGTCTTCCTCTTCCTCTGCGCTCGCAGAGGAAGAGTCCCGAAACGTGAGGGTTTGGGCTTGGTGGGACGTCAAAAACTGCCACGTGCCCCCCAATTTCGACGCTTCCAAAGTTGCCCCCAAAATCATGGAGGCAGTGAGAGCCAACGGCATCAAAGGCCCTCTCAACATCACTGCCTTTGGCGACGTTCAGCTACTCACCCGGGCCCACCAGGAAGCACTCGCCTACACCGGCGTTCGCTTCACCCACGTTAACGATGGAAAGAGTAGTGCCGATATTCTTTTTGACTTAATGTATTGGGTTTCGCAAAACCCTCCACCCGCGCATATACTCTTGATATCCGGCGATAGAGACTTCGCCGGCGTGTTGCATAGGTTGAGAATGAGTAACTACAATGTCTTGCTCGCTACTCCAGAGAGCGCGCCTGGTGTTCTTCACAGTGCTGCCACGATAGCGTGGCAATGGTCTTCGATGCTCAAGGGAGAAAATCTTACTGGAAAATGTTTCAACCATCCACCTGATGGGCGGTATCGTTCTTGGTATGGAAGCTACAAGCTGACGGCTTGTCTTGAAAAGCCGGCTCCGGTTGTGGCTCAGGAGGCTTCTGCTGCTGCCTCTTTGCCCAATGTGGAGGCTTACGAGCCTTCTTCTTCGGGTTTGGGTTCGGTTCCGAAATCGGTTGTGAAGCAGGTTAGGCATATATTGAGTTTGCATCCAGAAGGGATAGGCATTAGTGTTCTTCGCGCCGAGTTGGCAAAGTGTGGTGTGCGTTTGGATAAAGGTTTCTTTGGACATAAAAGGTTTTCCCGCTTTCTGTTGTCGTTGCCACATGTACAGCTTCAGCCCAGTGGTGATGCTAATTTTTCTGTGCATTTGGTTCCTTGGGAATTCCCAGAACCTTGTGAGAGTATTCCTGTGGCATCAACAATGTCTGGTGCGAATAGTGAGGAGAAAGGAAGTGCAGCAACTCCAAAGGTAAACGGTGAGGATAAAAGAAAGGTTAGGGTTGCTGATGAGAAATTCTCAATCACCTCGATCCTTGAAAGGAGTTCGGATGACAATTTAAAGCCAGTCCAACCGGGGCTTTCACAAGGGAGATCCAATGAGGAATATATGGATGGTGAATCATCATCTCCTGTATTGGTTGAAAAACATGTTTGTCAGCCACCAAATGAGTTGCAGAAATCTTCTGTAGCTTCTGACAAGGTTGTGAATGTGGCTAATGCACAACAATCAGAGACTCAACTGCCACCCAAGGACAACAAAGATTCCGAAACGAAGATGGATTCCTTAAAAGTGACTTCTCAAAAATCGTCTGTTGAAGACATTGTTAGGTCTGAGGTTGCAAGTCATAAAAGTAAGGGAAAAAATGCAACTTCAGTGAATCACTCAGCTGGAAATGGTCAATCAATGGCGGAAGACTATGTTATCACAAATTATGAATCTGGAGATGTTGAAGCAGAGAACAAATATGAGGATCCAACTAGAATGGAGGTTGATGAAGTTGTTCACAGTCCATCTTCTTCACCAGTTGATGGCTCTCCAGTTGTCCAAACACCTGCTGGAAGTCCTGAAACTAATAACAGAAGTCCAACATTCTTTAGATGGATTAGAAGTTTGTGGCCATTTGGGAAAAGCAATGAAAAGTATGATGATTTGATCGCTAATCAGAACAAGCTGGTTAGCCATGTTGAGGATTCCAAGTTATCTGAACTGGACCCGACTGTTAGTCAATCTGAAGAGCCCAAGTTATCAGAACTGGATCAGAATGTTAGTTATGTTGAAGATTCCAAGTTATCTGAATTGGACCAGACTGTTAGGCAACTTGAAGAGCCCAAGTTAACAGAATTGGATCAGAGTGTTAGTCATTCTGGAAAGCCTGAGTTATTTTCTAGTGCTTCCTTTTGGAATGATATGGAATCTTTCATTTTTGCGCCCAAGGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCATAAATTACAAAATGGTGGACCCCTGGTTCTTAGATCACTCCCCAAAGAAGACTTCCTTCAATTGGTGGAATTGTTAATAACAGAGAAAAAATGGTTGGAGGAAAGCCCCTCCAAAACATTTCCTTTTAAGATAACTCAACCTGTTCAGAAGAATTCATTGGTGAAATCCCATGGTGCAAATGCTTTGAGATCTCTCTTTATAGGTAGAAGAACATCACAGTTGAACTTGCCAAAATCATTAGAACATGATGTGGAGAAACACAATCAGAGTATTTCTCTTGCTCGAGTTTCTGCACCGGCTACGGAAACAAAATATACTGAGCGATCTAGAAATGATATATTAGAAGACTGTAAAAAACTCGTGAGTGAGATACTGAGGGAACACCCGGAGGGGTATAATATTGGTGCTTTCGGAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATACAGAAGCTGGGTTATCAAAAGTTGGCAGCCTTGTTACAGATAATGCCTGGGGTTAAATTAGAGTCCACTTATATTTTTCCTTCTGTTCCTGCTGTCTGTGATTCTGACTTGGAAACTTCTATCCTCAAAACTCAAGCAACCACTGATATTCATGCAGCTTCCAACTCAGATAGTGAATTATCTGAGTCAGCCCCGAAAGATGATAACATGGAATCCCCATGGCAGGAGTTAGGTCCTGTTTCTTTGGATTTGAAGTCAAGTCAGAAAGCTATAGAACTGGATACATCAAAATCAAAGCATCTTGATTATGAACCTGTCGAATCAGATGATGAGTTTTCTGCATCTGAAGGAGATGGCTCTTGTTTAACTCAATCAGCAGAGCAAAGAAAGCCAAAATGTAATGAACAAGACAGTTCTTTTTGGCAAGTTATGGATTTGCGGCACAGTAGCAAGGAAAAAGAGAACAGTGGCAAGAAGTCAGACAATGTTGACAGCTTGGGCATTTCTCTGGCTGGAATTTTAGATTCATCCACTGAGTCAACTGGGGATACCCTTTCCGAAATTCCTTCATTGAAATACAGAGAGAATAATGGCAAGAAGTCAGACAATGTTGACAGCTTGGACGCTTCTCTGACTGATTTGTTTAATTCATCCACTGAGTCAACTAGGGGTACACTTTCCAAAATTCCTTCATCAAATTACAGAGAGAAGCAAAGGTCTCGTAAGAACTATTCCTTTGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTGGTTGATGACTTCAAGAACAAGAAAGCAAATGGGTCAAAGATGCAAAACTGA

Predicted protein sequences of Glyma05g03050

Limit To All Plant Sequences

>Glyma05g03050.2   sequence type=predicted peptide   gene model=Glyma05g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGSRLFLIPAARPVLCKNVFFISSYSTRTLELCESSSSSSSSALAEEESRNVRVWAWWDVKNCHVPPNFDASKVAPKIMEAVRANGIKGPLNITAFGDVQLLTRAHQEALAYTGVRFTHVNDGKSSADILFDLMYWVSQNPPPAHILLISGDRDFAGVLHRLRMSNYNVLLATPESAPGVLHSAATIAWQWSSMLKGENLTGKCFNHPPDGRYRSWYGSYKLTACLEKPAPVVAQEASAAASLPNVEAYEPSSSGLGSVPKSVVKQVRHILSLHPEGIGISVLRAELAKCGVRLDKGFFGHKRFSRFLLSLPHVQLQPSGDANFSVHLVPWEFPEPCESIPVASTMSGANSEEKGSAATPKVNGEDKRKVRVADEKFSITSILERSSDDNLKPVQPGLSQGRSNEEYMDGESSSPVLVEKHVCQPPNELQKSSVASDKVVNVANAQQSETQLPPKDNKDSETKMDSLKVTSQKSSVEDIVRSEVASHKSKGKNATSVNHSAGNGQSMAEDYVITNYESGDVEAENKYEDPTRMEVDEVVHSPSSSPVDGSPVVQTPAGSPETNNRSPTFFRWIRSLWPFGKSNEKYDDLIANQNKLVSHVEDSKLSELDPTVSQSEEPKLSELDQNVSYVEDSKLSELDQTVRQLEEPKLTELDQSVSHSGKPELFSSASFWNDMESFIFAPKGSLLFSQSRSREDVVHKLQNGGPLVLRSLPKEDFLQLVELLITEKKWLEESPSKTFPFKITQPVQKNSLVKSHGANALRSLFIGRRTSQLNLPKSLEHDVEKHNQSISLARVSAPATETKYTERSRNDILEDCKKLVSEILREHPEGYNIGAFGRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKLESTYIFPSVPAVCDSDLETSILKTQATTDIHAASNSDSELSESAPKDDNMESPWQELGPVSLDLKSSQKAIELDTSKSKHLDYEPVESDDEFSASEGDGSCLTQSAEQRKPKCNEQDSSFWQVMDLRHSSKEKENSGKKSDNVDSLGISLAGILDSSTESTGDTLSEIPSLKYRENNGKKSDNVDSLDASLTDLFNSSTESTRGTLSKIPSSNYREKQRSRKNYSFVADPVLPNKDKLVDDFKNKKANGSKMQN*

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