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Report for Sequence Feature Glyma05g03000

Feature Type:gene_model
Chromosome:Gm05
Start:2294763
stop:2295930
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma05g03000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48490AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17961338-17961800 FORWARD LENGTH=120 SoyBaseE_val: 8.00E-10ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K080UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K080_SOYBN SoyBaseE_val: 1.00E-119ISS

Expression Patterns of Glyma05g03000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g03000
ParalogEvidenceComments
Glyma17g13660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g03000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g045100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma05g03000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma05g03000
>Glyma05g03000.2   sequence type=CDS   gene model=Glyma05g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCGGCAGAATCAGAGCATCCACTTCGTCGCTCGACACCTTAGACGGTTCTCCGTCCAAGATTCTCAAAGACGACACTTTCTCCTTCTACGAGGCTACTCTCATGAAGCTAATGCTTGGTGCGCGACGCGATACGAGTGAGGTTACAAATGATTCTTCAGTTAATTCACCTTCTGCGGAAGAAGCAAATCTCAAGCCAGATTTTAATCCTGCAACAAGCACTTCTTGTTCCGAGACAACGATGATGGACACGGAGTCTGATAACGATAACTCTTCACCTAGGGTTACTGATCACGTTTCTAGTGGGAGCTCGGAACAGCTAAAGCAGAGCAACGTTTCCATTCTTCATTTCTTCAAAGTTAAGGATACCGGACAGGCCGGTGTGTCTTCTTCCGAAGAGGCAACAACGTCAATGCGGAATGGAAGTTCTGAATCTATCTCATCAATTTGTGTTGAATCTGATTGCAGAAGTGAAGTGGAAGGTGTTCAAATTTTGCAATATTGTGAAATGTCGGATTAA
Predicted protein sequences of Glyma05g03000
>Glyma05g03000.2   sequence type=predicted peptide   gene model=Glyma05g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGRIRASTSSLDTLDGSPSKILKDDTFSFYEATLMKLMLGARRDTSEVTNDSSVNSPSAEEANLKPDFNPATSTSCSETTMMDTESDNDNSSPRVTDHVSSGSSEQLKQSNVSILHFFKVKDTGQAGVSSSEEATTSMRNGSSESISSICVESDCRSEVEGVQILQYCEMSD*






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