SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G24440 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:8662340-8663777 FORWARD LENGTH=251 | SoyBase | E_val: 1.00E-69 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1039 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR15067 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR15067:SF7 | Panther | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI | JGI | ISS | |
| UniRef100_B9RAN4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RAN4_RICCO | SoyBase | E_val: 4.00E-95 | ISS |
| UniRef100_I1K076 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K076_SOYBN | SoyBase | E_val: 8.00E-159 | ISS |
|
Glyma05g02960 not represented in the dataset |
Glyma05g02960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g044700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma05g02960.1 sequence type=CDS gene model=Glyma05g02960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCGTTACCAAATGCTCGATTCAGCACCCTCTTTCCTAGACTCCCTCAAGACACTTGAGACTGATATCCAACATGCCAATGTGCTGGCAGCTTCTATTCCAAGGGGCAAGGGCAGGGCTTGCCTTCAAATGAAGTTAGTTTACAATAAACTGGCACCAGTTTTTCTGTTCTTATTTCAATGGATGGATTACTCACGCTCGTGTCTATCTGTGCTCTCTACACATTTGAATCTTTTACCGAGTAGTTGCGTGCACAGCAATGGAAAGTCAGATATCTATTCTAGTGGAAGGAAAGCAACCATAAGGGAGTTCTACAATGTTATATTACCCTCACTTCAGCGCCTTCATGGTGATTTAGTAGAAGCTGACACTACTCAAGAAAATGATCACAGCATTGAGATGATTTCCAATAGGAGTGAAGAGGATAAGAGGAAGTCATCTGATTTGGACTTGGAGAGAGAACATGAGTGTGGCATTTGCTTAGAGTCTTGCACCAAAATGGTTTTTCCTAATTGCTGCCACGCCATGTGTATAAATTGTTACAGTGACGGAGTTAAGTCGGGGGATTTGTGGGTTCTAACATGCACTAGAGATGTGATTGATATACAACCCATACACACAGAAGATTTGTTGCGTCTCTATCTCTTTATAAACAACCTTCCCCAATATACCCCAGATGCTCTTTTTCTTATGTATTACGAGTACTTACTGTAA
>Glyma05g02960.1 sequence type=predicted peptide gene model=Glyma05g02960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRYQMLDSAPSFLDSLKTLETDIQHANVLAASIPRGKGRACLQMKLVYNKLAPVFLFLFQWMDYSRSCLSVLSTHLNLLPSSCVHSNGKSDIYSSGRKATIREFYNVILPSLQRLHGDLVEADTTQENDHSIEMISNRSEEDKRKSSDLDLEREHECGICLESCTKMVFPNCCHAMCINCYSDGVKSGDLWVLTCTRDVIDIQPIHTEDLLRLYLFINNLPQYTPDALFLMYYEYLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
