Glyma05g02850 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma05g02850

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2179140
stop:	2182626
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g02850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50230	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:20448632-20450855 REVERSE LENGTH=509	SoyBase	E_val: 0	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0288	KOG	WD40 repeat protein TipD	JGI		ISS
PTHR19878	Panther	AUTOPHAGY PROTEIN 16-LIKE	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
PF08614	PFAM	Autophagy protein 16 (ATG16)	JGI		ISS
UniRef100_B9RAQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein tipD, putative n=1 Tax=Ricinus communis RepID=B9RAQ4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K068	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K068_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma05g02850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g02850

Paralog	Evidence	Comments
Glyma17g13520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g02850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g043700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g02850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma05g02850

Limit To All Plant Sequences

>Glyma05g02850.1   sequence type=CDS   gene model=Glyma05g02850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAGCAGGGAAGTCACAAGAAGAAATTGCCAGTGAAGCTATCAAGCATACTTTGAGGGCTCTGCGGAAGCGCCATTTGCTTGAGGAAGCTGCTCATGCTCCCGCTGTTCTAGCTCTTTCTAGACCCATCGTTTCTCAGGGCTCTGAGTGGAAAGAGAAAGAAGAGAATCTTCAAGTGGAACTTCAGCAATGCTACAAAGCTCAATCTCGCCTGTCTGAGCAACTTGTTGTGGAAGTAGCTGAGTCCAGAGCTTCGAAAGCGTTGCTTCAAGAGAAAGAAAATGCATTGGCTGATCTGCAGAAGGAGTTGACTGAATTGAGGGATGAGTGCTCTCAATTGAAGGTGGACTTGGAAGAAAAGATTAAATCTCTGGAAGTGATTGTCAGCGAGAATTCTGAACTTAAAGCACAACTGGAGCAGATGACTATTAAAGCCAATAAAGCTGAAGCAGAAAATAAGATGTTGATAGACCGCTGGATGTTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCCAACGCACTGTATGAAGAGATGGTTGAGAAACTAAGGGCCAGTGGGTTAGAACAACTTGCAAGGCGGCAGGTGGATGGTATAGTTCGCCAAAGTGAAGAAGGTGCTGAGTTCTTTTTAGAGTCAAACATCCCTTCCATATGTAAATACAGGCTTCGTGCACATGAAGGTGGTTGTGCTTCCATGTTGTTTGAATACAATTCCAGTAAATTGATTACTGGGGGACAAGATCGGTTAGTTAAAATGTGGGATGCAAATACAGGATCCTTAAGTTCTACTCTTCAGGGCTGCCTTGGCTCAGTATTGGATCTCACAATCACCCATGATAATCGATCTGTCATTGCTGCAAGCAGCTCAAACAACTTGTATGTATGGGATGTCAACTCAGGTCGTGTCCGCCATACCCTTACTGGCCACACAGATAAAGTTTGTGCTGTAGATGTCAGCAAGATTTCAAGTCGTCATGTTGTCAGTGCTGCCTATGATCGTACAATAAAAGTTTGGGACTTAGTGAAAGGTTACTGCACAAACACAATAATATTTCACAGCAACTGCAATGCTCTTTCCTTCAGCATGGATGGTCAGACCATATTTTCGGGACATGTTGATGGTAACCTTCGGCTATGGGACATTCAAAGTGGAAAGTTACTTAGTGAGGTTGCTGCACATTCACTTGCAGTCACATCACTATCCCTTTCTCGAAATGGAAATGTTGTACTGACTAGTGGAAGGGACAATTTACACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGTGGCACATTAAAAGCCATGGGAAACAGAGTGGCTTCTAATTGGAGTCGCTCCTGTATCAGCCCAGATGACAATCACGTTGCTGCAGGGTCTGCTGATGGATCTGTCTATATTTGGTCAATATCTAAAGGTGATATAGTCAGTACTCTGAAGGAACACACTTCCTCTGTTCTGTGTTGTAGGTGGAGCGGAATTGGAAAACCCCTAGCTTCTGCTGATAAGAATGGGATTGTTTGCGTCTGGACATGA

Predicted protein sequences of Glyma05g02850

Limit To All Plant Sequences

>Glyma05g02850.1   sequence type=predicted peptide   gene model=Glyma05g02850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKAGKSQEEIASEAIKHTLRALRKRHLLEEAAHAPAVLALSRPIVSQGSEWKEKEENLQVELQQCYKAQSRLSEQLVVEVAESRASKALLQEKENALADLQKELTELRDECSQLKVDLEEKIKSLEVIVSENSELKAQLEQMTIKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEEMVEKLRASGLEQLARRQVDGIVRQSEEGAEFFLESNIPSICKYRLRAHEGGCASMLFEYNSSKLITGGQDRLVKMWDANTGSLSSTLQGCLGSVLDLTITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTIKVWDLVKGYCTNTIIFHSNCNALSFSMDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSLSLSRNGNVVLTSGRDNLHNLFDVRSLEVCGTLKAMGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVSTLKEHTSSVLCCRWSGIGKPLASADKNGIVCVWT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain